Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe18g00574 ATGCAGCAAGGTGATCAGACGGTTCTAAGCTTGAGACCTGGTGGCGGTCGACCTAGACTCCTTGGTCCTCGCTTTGAGCTTTCATCCTCATCTTCCTCATCATCTTCATCTTCTTTTGCCTTTGGTTCGTTTTCCTCTGATCTCCCCACCCTCCGTCCACATGGCGCTTCTTCCTCTTCCTTTTCTGTAAAGGCTGGAGATTCACGGTTTGAGGGTCGTGAGCGTGTTCGGTATACCCGAGATCAGCTTTTGCAGCTTCAGGAAGTCGTGGAAGTTCCAGATGATATACTAAAAATTAAACGGGATATTGAAGTGGAAATTTTTGGCGAGGAACAAAGTTGGAGTCGTGGAGAGAGCAATCAACTTAATCCGTCTCAGAATCGCTATTCTGAGCCTGACAATCGTGACTGGCGTGGCCGTTCTGCCCAATTCTCTGCTTCTGGAGAGGATAGGTCCAGGGAAACAATTCGGGATAGAGATTTTGGTGGTCATTTTGACTCTAGACAGCAAGATGCAAATCAATTGAATCGTCAAGATCCTCACTCATCTTGGACCCGAACCACTCCTAACCAAGGGGGAGGACCCCCTGCTTTAATCAAAGCTGAGGTACCATGGTCAGCTAGGAGAGGAACTCTCTCTGATAAGGATCGTGTCTTGAAGACTGTAAAGGGGATATTGAACAAGCTAACACCAGAAAAGTTCGATCTCCTTAAGGGTCAGCTAATTGACTCTGGAATCACCTCCGCTGATATTTTGAAGGATGTCATTTCACTTATTTTTGACAAGGCCGTTCTTGAACCCACATTCTGCCCCATGTATGCTCAATTATGTTCCGATCTGAATCAGAAGCTACCACAATTTCCGTCTGATGAACCAGGTGGTAGAGAAGTTACTTTTAAACGAGTCCTCTTAAATATCTGTCAGGAGGCTTTTGAAGGTGCTGACAAGTTGAGGGAAGAGCTTAGGCAGATGACTGCCCCTGAGCAAGAGAGCGAACGCAGGGATAAAGACAGACTTTTGAAACTTCGTACTCTTGGAAATATTCGATTAATTGGAGAGCTTCTGAAGCAAAAGATGGTGCCTGAGAAAATCGTCCACCACATTGTGCAGGAACTTTTAGGACCCGATAACAAATCTTGTCCTGCCGAAGAAAATGTTGAGGCCATCTGTCAATTCTTTAACACCATAGGTAAGCAGCTAGACGAGAACACTAAGTCACGACGTATAAATGACATGTACTTTGGCCGATTGAAAGAACTGACCACACACACTCAGTTGGCCCCACGACTGAAGTTCATGGTTCGTGATGTTCTTGATTTGCGTGCCAACAACTGGGTTCCTAGGCGTGAAGAGGTTAAAGCCAAAACTATTACTGAAATACATACAGAGGCAGAAAAAAATCTGGGACTACGTCCTGGTGCTACTGTTAATATGAGAAATAATCGTGGCGTTGTGTCTGGTTCTCCTGGGAACACCAGCCCTGGGGGCTTCCCTATCAATCGACCTGGTTTTGGGGGTATGATGCCTGGCATGCCAGGAACTAGGAAGATGCCTGGTATGCCAGGCATGGATAATGACAATTGGGAGGTACATAGGACCCGACCTATACCAAGGGGGGCAGATGGATCTGGGCGTGGCTCAGCATCCTTCGTTGGCAAAGGATCGGCGTTGAATGCAAGGCTTCTTCCCCAGGGTACTGGTGGGCTTATTAGTAATAAGAATAGTGCTCTATTGCAGGGTGCAGGTGCATCTACTACTCGTCCTGTTAACTTTGGTCATGGGTTAGAGCCCTCTGGTCAGGTTCATAAACCTATTGCCGCAGTAACAGTTCCTCCACCTGCAGAGCGACCACAGGTTCCAGCTGCATCTTTAAAACAAGATGACCTCAGAAAGAAAACTCACTCTCTTCTTGAAGAATATTTCAGTATCCGGATTTTGGATGAAGCTTTACAGTGCGTGGAAGAACTCATGTCACCAGCTTACCACCCTGAGGTTGTAAAAGAAGCCATTTCCTTGGCCCTAGAGAAAAGCCCACCATGTGTTGAAGCAGTTGTAAAGTTTCTGGACTATTTACTCTCCAGGAAGGTTTTTACAGCTAGTGACATTGGGACTGGATGCTTGCTTTATGCTTCCATGCTCGATGACGCAGGCATTGATTTACCAAAAGCACCCATCAATTTTGGTGAGATAATTGGGAAACTTGTTATATCTGGTGGTTTGGATTTTCAGGTGGTGAAAGAGGCCATTAAGAAGGTGGAAGACGACAGGTTTAGGAAAGATATATTTGATGCTGTTTTGAAGACGATTAGTTCCAATGTGTCTGGACAAGGATTATTGGACTCGATGGCATCCGATATCGAAGGCTGTCGAAATCTGGCATATTAA 2385 45.83 MQQGDQTVLSLRPGGGRPRLLGPRFELSSSSSSSSSSSFAFGSFSSDLPTLRPHGASSSSFSVKAGDSRFEGRERVRYTRDQLLQLQEVVEVPDDILKIKRDIEVEIFGEEQSWSRGESNQLNPSQNRYSEPDNRDWRGRSAQFSASGEDRSRETIRDRDFGGHFDSRQQDANQLNRQDPHSSWTRTTPNQGGGPPALIKAEVPWSARRGTLSDKDRVLKTVKGILNKLTPEKFDLLKGQLIDSGITSADILKDVISLIFDKAVLEPTFCPMYAQLCSDLNQKLPQFPSDEPGGREVTFKRVLLNICQEAFEGADKLREELRQMTAPEQESERRDKDRLLKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLGPDNKSCPAEENVEAICQFFNTIGKQLDENTKSRRINDMYFGRLKELTTHTQLAPRLKFMVRDVLDLRANNWVPRREEVKAKTITEIHTEAEKNLGLRPGATVNMRNNRGVVSGSPGNTSPGGFPINRPGFGGMMPGMPGTRKMPGMPGMDNDNWEVHRTRPIPRGADGSGRGSASFVGKGSALNARLLPQGTGGLISNKNSALLQGAGASTTRPVNFGHGLEPSGQVHKPIAAVTVPPPAERPQVPAASLKQDDLRKKTHSLLEEYFSIRILDEALQCVEELMSPAYHPEVVKEAISLALEKSPPCVEAVVKFLDYLLSRKVFTASDIGTGCLLYASMLDDAGIDLPKAPINFGEIIGKLVISGGLDFQVVKEAIKKVEDDRFRKDIFDAVLKTISSNVSGQGLLDSMASDIEGCRNLAY 794
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 6203733 6210522 - Cp4.1LG18g05830.1 Cpe18g00574 485035
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe18g00574 794 PANTHER MIF4G DOMAIN-CONTAINING PROTEIN / MA3 DOMAIN-CONTAINING PROTEIN ISOFORM 2 3 792 - -
Cpe18g00574 794 SMART ma3_7 629 741 IPR003891 -
Cpe18g00574 794 MobiDBLite consensus disorder prediction 167 192 - -
Cpe18g00574 794 MobiDBLite consensus disorder prediction 1 42 - -
Cpe18g00574 794 MobiDBLite consensus disorder prediction 113 130 - -
Cpe18g00574 794 Gene3D - 622 786 - -
Cpe18g00574 794 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 3 792 IPR045208 GO:0003743
Cpe18g00574 794 SUPERFAMILY ARM repeat 624 782 IPR016024 -
Cpe18g00574 794 MobiDBLite consensus disorder prediction 25 42 - -
Cpe18g00574 794 MobiDBLite consensus disorder prediction 112 198 - -
Cpe18g00574 794 SUPERFAMILY ARM repeat 213 447 IPR016024 -
Cpe18g00574 794 ProSiteProfiles MI domain profile. 628 750 IPR003891 -
Cpe18g00574 794 Pfam MIF4G domain 219 444 IPR003890 GO:0003723|GO:0005515
Cpe18g00574 794 MobiDBLite consensus disorder prediction 150 166 - -
Cpe18g00574 794 Pfam MA3 domain 629 741 IPR003891 -
Cpe18g00574 794 Gene3D - 211 445 - -
Cpe18g00574 794 SMART if4_15 219 444 IPR003890 GO:0003723|GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe04g01260 Cpe18g00574 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00288 Cpe-Chr6:1578984 Cpe18g00574 Cpe-Chr18:6203733 0 dispersed
Cpe09g00991 Cpe-Chr9:8770367 Cpe18g00574 Cpe-Chr18:6203733 9.72E-07 dispersed
Cpe12g00060 Cpe-Chr12:347729 Cpe18g00574 Cpe-Chr18:6203733 1.44E-07 dispersed
Cpe17g00259 Cpe-Chr17:1702578 Cpe18g00574 Cpe-Chr18:6203733 8.62E-67 dispersed
Cpe18g00574 Cpe-Chr18:6203733 Cpe20g00337 Cpe-Chr20:1898532 4.16E-07 dispersed
Cpe18g00574 Cpe-Chr18:6203733 Cpe02g00316 Cpe-Chr2:1669715 0 wgd
Cpe18g00574 Cpe-Chr18:6203733 Cpe04g01260 Cpe-Chr4:10480316 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe18g00574 K03260 - csv:101207520 1346.26