Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe18g00584 ATGGCGAAATCCACATCGCAACAACTTCAGATTAGAGAATCGAACAACAATGTAAATAAAAATATTGTAATGAAGACGAAAACAAAGCGAACTCGGAGGAGCGTACCGAGAGATTCGCCTCCTCAACGAAGCTCCATTTACCGCGGCGTTACTAGGCATCGATGGACGGGGAGATATGAGGCTCATTTGTGGGATAAGAATTGCTGGAATGAATCGCAGAACAAGAAAGGAAGACAAGGTGCATACGATGAGGAGGAAGCGGCAGCCCATGCGTACGACCTTGCAGCACTTAAATACTGGGGCCAAGAAACCATTCTTAATTTTCCGCTCTCGACGTATCAAAAAGAGCTGAAGGAAATGGAGGGACAGTCGAGGGAAGAATACATTGGGTCGTTGAGAAGAAAAAGTAGTGGGTTTTCTCGTGGGGTTTCCAAATACAGAGGCGTTGCCAGGCACCATCACAATGGTAGATGGGAAGCTCGAATTGGCAGGGTGTTTGGCAATAAGTATCTCTATCTTGGAACATATGCGACGCAAGAAGAAGCAGCCACGGCGTACGATATCGCAGCCATAGAATACCGTGGACTCAACGCCGTCACCAATTTCGACCTGAGCCGTTACATTAAGTGGCTAAAACCCTGCAACGACGTCGTTTACGCCAGCGACCACACTCTAAATATTGACTCTGTCCTCCCAAGCCCTAAACAAGAACTGGACCTAGGGCTCTTCCCGGCGGACCAAAACCAAAGCAGCACCGATTCGGCGACGGCGGAACCAATTGCCTTACCTCCATCCCACAGACCGACCACCACCAGCACGTCAGCTCTCGGCCTCCTGCTACAATCTTCCAAGTTCAAGGAAATGATGGAGATGAATTCGGCAACGGAGTGTCCGTCGACGCCGTCGTCAGCGGAGAAGCTCGAACGGCGACGGTGCTTGTTTCCCGATGATGTTCAGACTTTCTTTGCCTGCGATAGCTCGGGATCTTACTGCTATGGAGAAGCGGATGATGCAATTTTTAGCGATTTCAACTGTTTCGTACCGCCGCCGCCGTCGCATTACGATTTTGACGATTAG 1077 49.77 MAKSTSQQLQIRESNNNVNKNIVMKTKTKRTRRSVPRDSPPQRSSIYRGVTRHRWTGRYEAHLWDKNCWNESQNKKGRQGAYDEEEAAAHAYDLAALKYWGQETILNFPLSTYQKELKEMEGQSREEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAATAYDIAAIEYRGLNAVTNFDLSRYIKWLKPCNDVVYASDHTLNIDSVLPSPKQELDLGLFPADQNQSSTDSATAEPIALPPSHRPTTTSTSALGLLLQSSKFKEMMEMNSATECPSTPSSAEKLERRRCLFPDDVQTFFACDSSGSYCYGEADDAIFSDFNCFVPPPPSHYDFDD 358
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 6264092 6266113 + Cp4.1LG18g05740.1 Cpe18g00584 485045
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe18g00584 358 ProSiteProfiles AP2/ERF domain profile. 46 109 IPR001471 GO:0003700|GO:0006355
Cpe18g00584 358 SMART rav1_2 145 209 IPR001471 GO:0003700|GO:0006355
Cpe18g00584 358 SMART rav1_2 46 115 IPR001471 GO:0003700|GO:0006355
Cpe18g00584 358 PANTHER AP2 DOMAIN-CONTAINING TRANSCRIPTION FACTOR 2 337 - -
Cpe18g00584 358 SUPERFAMILY DNA-binding domain 45 111 IPR016177 GO:0003677
Cpe18g00584 358 CDD AP2 144 205 IPR001471 GO:0003700|GO:0006355
Cpe18g00584 358 MobiDBLite consensus disorder prediction 247 271 - -
Cpe18g00584 358 Gene3D AP2/ERF domain 144 205 IPR036955 GO:0003700|GO:0006355
Cpe18g00584 358 Gene3D AP2/ERF domain 46 111 IPR036955 GO:0003700|GO:0006355
Cpe18g00584 358 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 2 337 - -
Cpe18g00584 358 PRINTS Ethylene responsive element binding protein signature 47 58 IPR001471 GO:0003700|GO:0006355
Cpe18g00584 358 PRINTS Ethylene responsive element binding protein signature 185 205 IPR001471 GO:0003700|GO:0006355
Cpe18g00584 358 ProSiteProfiles AP2/ERF domain profile. 145 203 IPR001471 GO:0003700|GO:0006355
Cpe18g00584 358 SUPERFAMILY DNA-binding domain 144 205 IPR016177 GO:0003677
Cpe18g00584 358 Pfam AP2 domain 46 101 IPR001471 GO:0003700|GO:0006355
Cpe18g00584 358 Pfam AP2 domain 144 195 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01302 Cpe-Chr1:7828280 Cpe18g00584 Cpe-Chr18:6264092 1.13E-91 dispersed
Cpe03g00523 Cpe-Chr3:3083080 Cpe18g00584 Cpe-Chr18:6264092 1.16E-74 dispersed
Cpe04g00071 Cpe-Chr4:701290 Cpe18g00584 Cpe-Chr18:6264092 1.39E-86 dispersed
Cpe09g00347 Cpe-Chr9:2099690 Cpe18g00584 Cpe-Chr18:6264092 1.25E-82 dispersed
Cpe11g00748 Cpe-Chr11:5951516 Cpe18g00584 Cpe-Chr18:6264092 1.14E-21 dispersed
Cpe17g00642 Cpe-Chr17:5221863 Cpe18g00584 Cpe-Chr18:6264092 6.07E-78 dispersed
Cpe18g00584 Cpe-Chr18:6264092 Cpe11g00106 Cpe-Chr11:586597 3.21E-80 dispersed
Cpe18g00584 Cpe-Chr18:6264092 Cpe12g00785 Cpe-Chr12:7092240 9.45E-108 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50894 PF00847 AP2 1.10E-09 CL0081 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe18g00584 K09285 - csv:101219103 630.557