Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe18g00596 ATGGGCATGGAATTGAGAAACTACAAGCTTGTTAGGTTTTATTCTGATCACAAAAAGCATAAGGAATCTGCCATTGGAAGCAGCAACAATGAAGCAATGCAACTTGAGAAGTCATCATCAAAATACTATATTCCGTCGTCGACATTCTTAATGCCTGACAATGGACTAGGGGGAATCAAAAGTAAATTCACTGAAACTTTTAAAACTGAGAAGTCTAAGGTGTTTCCGGAGGACTATGAACCATGGAGCAAAAGAATACTAGACCCTGGTAGCAAAATTGTTTTGAAATGGAACCGAGTGTTCATATGCTCGTGCTTATTGGCACTCTTTGTCGACCCGCTATATCTTTACTTGCCTGCTTTTAATGGGAATGGGCAATCCCAATGCGTGAGGACAGACTGGAAATTGCGAATTGTTGTGACTTGTTTCCGGACTGTTGCAGATTTTTTCTATCTTCTGCACATGATTATAAAGTTTAGAACAGCTTATGTTGCTCCTAGCTCTCGAGTTTTTGGGAGAGGCGAGCTTGTGATGGATCCAAAGATGATAGCAAAGAGGTATATTAGATCTGATTTTTTCATCGATCTAATTGCCACCCTGCCTCTCCCTCAGATTGTCATCTGGTTCATCATACCTGCAACAAGGAGTCGTCTAACGGATCATAAAAACAATGCTCTTGCACTTATTGTTCTGCTTCAATATATTCCGAGATTGTATTTGATTTTCCCATTAAGTTCAGAAATCATCAAAGCAAATGGAGTTGTTACAAAGACAGCTTGGGCAGGAGCTGCTTATAATCTTCTACTCTATATGTTGGCTAGCCATGTTTTAGGTGCTGCATGGTATTTGCTGTCGGTTGATAGATATACGTCATGCTGGAAATCATTTTGTAGGAAGAAAGAATACAATACACTGGAATGCAACCTAACTTTTTTTGATTGCGATACATTTAACCATAATGACCGCGATACATGGGCAAATAGTACACTTGTTTTTGAAAAATGTGGCCCGAAAGGAATTTTCAAGTATGGCATTTTTGGGCAAGCAATGTCGAAGAATGTCGTCTCTTCAAGCTTTATTGAAAAGTACTTCTATTGTTTGTGGTGGGGCTTGCAAAACCTGAGTTCATATGGACAGAATTTGGAAACAACCACTTTTATGGGTGAGACACTGTTTGCTGTGCTCATTGCCATTGTAGGCCTTGTATTATTTGCCCATCTTATCGGAAACATGCAGACGTATCTGCAATCCCTCACTGTGAGGCGTGAAGAATGGAGACTAAAGCAAAGAGACACTGAAGAGTGGATGAGACATCGTCAACTCCCTGAAGACTTGAAACGACGAGTTCGACGTTTTGTACAATATAAGTGGGTAGCAACTCAAGGAGTGGATGAAGAAGTCATCTTGCAAAGCTTGCCTGCTGATCTTCGACGTGATATTCAGTGCCACCTATGTCTAGATCTTGTCCGACGAGTTCCGTTCTTCGCACAGATGGATGATCAGCTACTTGATGCAATATGTGAACGCCTGATCTCCTCCTTGAGCACTGAAGGTACTTATATTGTACGGGAGGGGGACCCAGTGACAGAGATGTTGTTTGTCATACGAGGCAGATTGGAGAGCTCTACCACAAATGGAGGCCGCTCTGGTTTCTTTAACTCCATAACATTACGTCCTGGAGACTTTTGTGGGGAGGAGCTACTTTCTTGGGCTTTGCTTCCAAAATCAACCACCAACTTGCCCTCCTCAACTAGAACAGTCAGAGCGCTCAACGAAGTCGAAGCTTTTGCACTCCGCGCCGAAGATCTTAAATTTGTGGCCAACCAATTTAGACGTCTGCACAGTAAAAAATTGCAGCACACGTTCCGCTTTTACTCTCACCATTGGAGAACATGGGCAGCTTGCTTTATTCAAGCTGCTTGGCGTCGCCATAAGAAAAGGATGATGGCAAAAGATCTGTTAATGAAGGAATCATTTGCGTTACCAGAAGAAGTGGCAGATGGAACTAGCCAAGGAGGAGAAGGATTCTCTGTTGTTTCACATCCATCTCAGGCTAAAATGTTTCTGGATGTAGCCTTACTAGCTTCAAGGTTTGCTGCAAACACACGGAGAGGCGCTCAGAGAATGAAAGATGACTTGCCGAAGTTACAAAAACCCGATGAACCTGACTTTTCCATTGAGCCAGATAGATAA 2193 42.36 MGMELRNYKLVRFYSDHKKHKESAIGSSNNEAMQLEKSSSKYYIPSSTFLMPDNGLGGIKSKFTETFKTEKSKVFPEDYEPWSKRILDPGSKIVLKWNRVFICSCLLALFVDPLYLYLPAFNGNGQSQCVRTDWKLRIVVTCFRTVADFFYLLHMIIKFRTAYVAPSSRVFGRGELVMDPKMIAKRYIRSDFFIDLIATLPLPQIVIWFIIPATRSRLTDHKNNALALIVLLQYIPRLYLIFPLSSEIIKANGVVTKTAWAGAAYNLLLYMLASHVLGAAWYLLSVDRYTSCWKSFCRKKEYNTLECNLTFFDCDTFNHNDRDTWANSTLVFEKCGPKGIFKYGIFGQAMSKNVVSSSFIEKYFYCLWWGLQNLSSYGQNLETTTFMGETLFAVLIAIVGLVLFAHLIGNMQTYLQSLTVRREEWRLKQRDTEEWMRHRQLPEDLKRRVRRFVQYKWVATQGVDEEVILQSLPADLRRDIQCHLCLDLVRRVPFFAQMDDQLLDAICERLISSLSTEGTYIVREGDPVTEMLFVIRGRLESSTTNGGRSGFFNSITLRPGDFCGEELLSWALLPKSTTNLPSSTRTVRALNEVEAFALRAEDLKFVANQFRRLHSKKLQHTFRFYSHHWRTWAACFIQAAWRRHKKRMMAKDLLMKESFALPEEVADGTSQGGEGFSVVSHPSQAKMFLDVALLASRFAANTRRGAQRMKDDLPKLQKPDEPDFSIEPDR 730
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 6342951 6348752 + Cp4.1LG18g05920.1 Cpe18g00596 485057
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe18g00596 730 Gene3D - 102 419 - -
Cpe18g00596 730 Gene3D Jelly Rolls 492 612 IPR014710 -
Cpe18g00596 730 Pfam Ion transport protein 97 422 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cpe18g00596 730 ProSiteProfiles cAMP/cGMP binding motif profile. 494 578 IPR000595 -
Cpe18g00596 730 SUPERFAMILY cAMP-binding domain-like 421 616 IPR018490 -
Cpe18g00596 730 SMART cnmp_10 494 625 IPR000595 -
Cpe18g00596 730 Gene3D Helix hairpin bin 420 485 - -
Cpe18g00596 730 SUPERFAMILY Voltage-gated potassium channels 89 416 - -
Cpe18g00596 730 MobiDBLite consensus disorder prediction 704 730 - -
Cpe18g00596 730 PRINTS EAG/ELK/ERG potassium channel family signature 155 164 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cpe18g00596 730 PRINTS EAG/ELK/ERG potassium channel family signature 272 282 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cpe18g00596 730 PRINTS EAG/ELK/ERG potassium channel family signature 363 380 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cpe18g00596 730 PRINTS EAG/ELK/ERG potassium channel family signature 389 400 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cpe18g00596 730 PRINTS EAG/ELK/ERG potassium channel family signature 407 416 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cpe18g00596 730 PRINTS EAG/ELK/ERG potassium channel family signature 457 464 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cpe18g00596 730 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 14-RELATED 59 727 - -
Cpe18g00596 730 MobiDBLite consensus disorder prediction 703 730 - -
Cpe18g00596 730 CDD CAP_ED 494 625 IPR000595 -
Cpe18g00596 730 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 59 727 - -
Cpe18g00596 730 Pfam Cyclic nucleotide-binding domain 517 605 IPR000595 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00811 Cpe-Chr5:5023238 Cpe18g00596 Cpe-Chr18:6342951 0 dispersed
Cpe10g00221 Cpe-Chr10:1262951 Cpe18g00596 Cpe-Chr18:6342951 0 dispersed
Cpe16g00526 Cpe-Chr16:6198876 Cpe18g00596 Cpe-Chr18:6342951 0 dispersed
Cpe18g00596 Cpe-Chr18:6342951 Cpe18g00838 Cpe-Chr18:7736171 7.27E-71 dispersed
Cpe20g00053 Cpe-Chr20:241688 Cpe18g00596 Cpe-Chr18:6342951 2.60E-128 dispersed
Cpe01g02418 Cpe-Chr1:20101863 Cpe18g00596 Cpe-Chr18:6342951 7.13E-130 transposed
Cpe18g00596 Cpe-Chr18:6342951 Cpe04g01281 Cpe-Chr4:10588515 0 wgd
Cpe18g00596 Cpe-Chr18:6342951 Cpe07g00711 Cpe-Chr7:5979654 9.20E-171 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe18g00596 K05391 - csv:101218643 1369.76