Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe18g00605 ATGGGAATTCAGGGAGACAGTGTTGTGAAGGGTTTCGGCGGCGGATGGGGCGTGGTCGCTAAACCCTGCGACTCCTGCAAGACAGGGCCTGCAGCCGTCTATTGTCGACCTGACTCTGCTTTCCTCTGCCTTTCCTGCGACGCCAAAATTCACTGCGCTAATAAGTTCGCCTCTCGCCACGAGCGCGTCTGGATGTGCGAGGTCTGTGAACAGGCTCCTGCTGTGGTCATGTGCAAGGCCGATGCTGCGGCTCTCTGTGTTACCTGCGATGCCGATATTCATTCCGCTAACCCATTGGCACGTCGCCACGAGCGTGTCCCGGTCGAGCCTTTTTTCGACACGGCAGAGTCAATGGTCAAATCCTCTTCGGGTTTCAATTTTCTCCTGCCCACTGAAACCAACGCCAGTGGCTGCCACGGTGCCCATCAACACGAGGAAGTGGAGGTTGCCTCCTGGCTTTTATCCAACCCACCTTTCAACTCTAAGCTCGTGGACGAACCTGAAATCAAGCCACCTGGTCATGATCAAATGTTCTTCACTGAAATGGATTCCTTTATTGATTTTGACTACCCAAACCCAGTCAACAACCACAGCGCGGTTAACGACAGCGTCGTCCCTGTTCAAACCAAGCCACTCTGTACTCCGGTGATCAATACCCACTCCCAAGAAAATTGCTACGACATCGATTTTTGCAGATCCAAGCTCAATTCATTCGGCCATCAACCACTATCCCTGAGCCACAGTGTTTCCTCTTCTTCCCTAGAAGTCGGAGTTGTCCCAGAAGCGAATTCGATGTCCGACATATCATACCCATTGGGTCAAAGCGTGAGTAGTGGGGGGGACTCGGGGCTACCGGTATCGGGATCCGGCAACCCAGCGACTCAATTATGTGGAATCGACCGGGAGGCGAGAGTGTTGAGGTACAGAGAGAAGAGGAAGAACAGAAAGTTCGAGAAGACAATCCGGTACGCTTCAAGAAAAGCTTACGCGGAAACCCGACCCAGAATCAAAGGCCGGTTCGCCAAACGGACTGACACACTATCAGAGGTTGAAGAAATGTATGGGTCGGCTGGTTCGTCTCTGTTCTTAGCAGACACCCAGTACGGCGTGGTACCGACATTTTAA 1125 52.71 MGIQGDSVVKGFGGGWGVVAKPCDSCKTGPAAVYCRPDSAFLCLSCDAKIHCANKFASRHERVWMCEVCEQAPAVVMCKADAAALCVTCDADIHSANPLARRHERVPVEPFFDTAESMVKSSSGFNFLLPTETNASGCHGAHQHEEVEVASWLLSNPPFNSKLVDEPEIKPPGHDQMFFTEMDSFIDFDYPNPVNNHSAVNDSVVPVQTKPLCTPVINTHSQENCYDIDFCRSKLNSFGHQPLSLSHSVSSSSLEVGVVPEANSMSDISYPLGQSVSSGGDSGLPVSGSGNPATQLCGIDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTDTLSEVEEMYGSAGSSLFLADTQYGVVPTF 374
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 6389288 6391499 - Cp4.1LG18g06000.1 Cpe18g00605 485066
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe18g00605 374 CDD Bbox1_BBX-like 22 65 - -
Cpe18g00605 374 Pfam CCT motif 301 343 IPR010402 GO:0005515
Cpe18g00605 374 ProSiteProfiles CCT domain profile. 301 343 IPR010402 GO:0005515
Cpe18g00605 374 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 9 374 IPR045281 GO:0009909
Cpe18g00605 374 Pfam B-box zinc finger 63 108 IPR000315 GO:0008270
Cpe18g00605 374 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 5 9 374 - -
Cpe18g00605 374 SMART bboxneu5 18 65 IPR000315 GO:0008270
Cpe18g00605 374 SMART bboxneu5 66 108 IPR000315 GO:0008270
Cpe18g00605 374 CDD Bbox1_BBX-like 66 108 - -
Cpe18g00605 374 ProSiteProfiles Zinc finger B-box type profile. 61 108 IPR000315 GO:0008270
Cpe18g00605 374 ProSiteProfiles Zinc finger B-box type profile. 23 65 IPR000315 GO:0008270
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe11g00603 Cpe18g00605 CCT
Cpe04g01287 Cpe18g00605 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00334 Cpe-Chr7:2164576 Cpe18g00605 Cpe-Chr18:6389288 2.92E-104 dispersed
Cpe11g00283 Cpe-Chr11:1535861 Cpe18g00605 Cpe-Chr18:6389288 6.38E-105 dispersed
Cpe11g00603 Cpe-Chr11:3621019 Cpe18g00605 Cpe-Chr18:6389288 9.01E-90 dispersed
Cpe18g00605 Cpe-Chr18:6389288 Cpe10g00649 Cpe-Chr10:3738125 5.64E-08 dispersed
Cpe18g00605 Cpe-Chr18:6389288 Cpe04g01287 Cpe-Chr4:10630461 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50896 PF00643 zf-B_box 6.70E-07 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe18g00605 - - csv:101214816 662.529