Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe18g00605 ATGGGAATTCAGGGAGACAGTGTTGTGAAGGGTTTCGGCGGCGGATGGGGCGTGGTCGCTAAACCCTGCGACTCCTGCAAGACAGGGCCTGCAGCCGTCTATTGTCGACCTGACTCTGCTTTCCTCTGCCTTTCCTGCGACGCCAAAATTCACTGCGCTAATAAGTTCGCCTCTCGCCACGAGCGCGTCTGGATGTGCGAGGTCTGTGAACAGGCTCCTGCTGTGGTCATGTGCAAGGCCGATGCTGCGGCTCTCTGTGTTACCTGCGATGCCGATATTCATTCCGCTAACCCATTGGCACGTCGCCACGAGCGTGTCCCGGTCGAGCCTTTTTTCGACACGGCAGAGTCAATGGTCAAATCCTCTTCGGGTTTCAATTTTCTCCTGCCCACTGAAACCAACGCCAGTGGCTGCCACGGTGCCCATCAACACGAGGAAGTGGAGGTTGCCTCCTGGCTTTTATCCAACCCACCTTTCAACTCTAAGCTCGTGGACGAACCTGAAATCAAGCCACCTGGTCATGATCAAATGTTCTTCACTGAAATGGATTCCTTTATTGATTTTGACTACCCAAACCCAGTCAACAACCACAGCGCGGTTAACGACAGCGTCGTCCCTGTTCAAACCAAGCCACTCTGTACTCCGGTGATCAATACCCACTCCCAAGAAAATTGCTACGACATCGATTTTTGCAGATCCAAGCTCAATTCATTCGGCCATCAACCACTATCCCTGAGCCACAGTGTTTCCTCTTCTTCCCTAGAAGTCGGAGTTGTCCCAGAAGCGAATTCGATGTCCGACATATCATACCCATTGGGTCAAAGCGTGAGTAGTGGGGGGGACTCGGGGCTACCGGTATCGGGATCCGGCAACCCAGCGACTCAATTATGTGGAATCGACCGGGAGGCGAGAGTGTTGAGGTACAGAGAGAAGAGGAAGAACAGAAAGTTCGAGAAGACAATCCGGTACGCTTCAAGAAAAGCTTACGCGGAAACCCGACCCAGAATCAAAGGCCGGTTCGCCAAACGGACTGACACACTATCAGAGGTTGAAGAAATGTATGGGTCGGCTGGTTCGTCTCTGTTCTTAGCAGACACCCAGTACGGCGTGGTACCGACATTTTAA 1125 52.71 MGIQGDSVVKGFGGGWGVVAKPCDSCKTGPAAVYCRPDSAFLCLSCDAKIHCANKFASRHERVWMCEVCEQAPAVVMCKADAAALCVTCDADIHSANPLARRHERVPVEPFFDTAESMVKSSSGFNFLLPTETNASGCHGAHQHEEVEVASWLLSNPPFNSKLVDEPEIKPPGHDQMFFTEMDSFIDFDYPNPVNNHSAVNDSVVPVQTKPLCTPVINTHSQENCYDIDFCRSKLNSFGHQPLSLSHSVSSSSLEVGVVPEANSMSDISYPLGQSVSSGGDSGLPVSGSGNPATQLCGIDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTDTLSEVEEMYGSAGSSLFLADTQYGVVPTF 374
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 6389288 6391499 - Cp4.1LG18g06000.1 Cpe18g00605 485066

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe18g00605 374 CDD Bbox1_BBX-like 22 65 - -
Cpe18g00605 374 Pfam CCT motif 301 343 IPR010402 GO:0005515
Cpe18g00605 374 ProSiteProfiles CCT domain profile. 301 343 IPR010402 GO:0005515
Cpe18g00605 374 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 9 374 IPR045281 GO:0009909
Cpe18g00605 374 Pfam B-box zinc finger 63 108 IPR000315 GO:0008270
Cpe18g00605 374 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 5 9 374 - -
Cpe18g00605 374 SMART bboxneu5 18 65 IPR000315 GO:0008270
Cpe18g00605 374 SMART bboxneu5 66 108 IPR000315 GO:0008270
Cpe18g00605 374 CDD Bbox1_BBX-like 66 108 - -
Cpe18g00605 374 ProSiteProfiles Zinc finger B-box type profile. 61 108 IPR000315 GO:0008270
Cpe18g00605 374 ProSiteProfiles Zinc finger B-box type profile. 23 65 IPR000315 GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe18g00605 - - - csv:101214816 662.529
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe11g00603 Cpe18g00605 CCT
Cpe04g01287 Cpe18g00605 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00334 Cpe-Chr7:2164576 Cpe18g00605 Cpe-Chr18:6389288 2.92E-104 dispersed
Cpe11g00283 Cpe-Chr11:1535861 Cpe18g00605 Cpe-Chr18:6389288 6.38E-105 dispersed
Cpe11g00603 Cpe-Chr11:3621019 Cpe18g00605 Cpe-Chr18:6389288 9.01E-90 dispersed
Cpe18g00605 Cpe-Chr18:6389288 Cpe10g00649 Cpe-Chr10:3738125 5.64E-08 dispersed
Cpe18g00605 Cpe-Chr18:6389288 Cpe04g01287 Cpe-Chr4:10630461 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g1077 . . . . . . . . Cmo10g00449 Cmo11g00414 Cma05g00679 . Car05g00623 . Sed08g0523 Cpe04g01287 Cpe18g00605 Bhi02g00794 Tan09g1648 Cmetu02g0351 . Hepe09g0511 . . Cla11g01201 Cam11g1260 Cec11g1272 Cco11g1273 Clacu11g1418 Cmu11g1240 Cre11g1658 . . Cone11ag0169 Cone18ag1317 Lsi06g01109 Csa02g00615 Chy05g00918 Cme02g01520 . . . Bda09g00945 Bpe08g00686 Bpe13g01202 Bma01g00353 Bma06g00924 Sed03g2846 Cmo05g00714 . Cma10g00418 Cma11g00415 Car10g00391 . Cpe11g00603 . Bhi06g01274 Tan08g0825 Cmetu05g0666 . Hepe08g2141 . . Cla06g01299 Cam06g1444 Cec06g1497 Cco06g1497 Clacu06g1404 Cmu06g1365 Cre06g2174 Lsi11g00747 Csa01g02115 Chy02g02191 Cme05g01392
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe07g00334 CCT 6 333 C2C2-CO-like Transcription Factor Family AT5G15850 50.1 8.4e-45 178.3
Cpe07g00334 CCT 4 333 C2C2-CO-like Transcription Factor Family AT3G02380 50.6 7.7e-43 171.8
Cpe11g00283 CCT 1 337 C2C2-CO-like Transcription Factor Family AT5G24930 61.1 2.1e-83 306.6
Cpe07g00334 CCT 1 333 C2C2-CO-like Transcription Factor Family AT5G24930 58.9 6.5e-77 285.0
Cpe04g01287 CCT,CST 20 371 C2C2-CO-like Transcription Factor Family AT5G24930 51.3 6.7e-58 221.9
Cpe18g00605 CCT,CST 20 374 C2C2-CO-like Transcription Factor Family AT5G24930 50.4 4.8e-56 215.7
Cpe04g01287 CCT,CST 5 371 C2C2-CO-like Transcription Factor Family AT5G57660 50.1 2.8e-64 243.0
Cpe05g01383 CCT,CST 47 461 C2C2-CO-like Transcription Factor Family AT3G07650 54.7 5.8e-89 325.1
Cpe15g00673 CCT,CST 1 411 C2C2-CO-like Transcription Factor Family AT3G07650 54.7 3.2e-87 319.3
Cpe04g00659 CCT,CST 1 413 C2C2-CO-like Transcription Factor Family AT3G07650 53.4 2.7e-86 316.2
Cpe16g00362 CST 25 293 C2C2-CO-like Transcription Factor Family AT3G07650 50.5 6.7e-53 205.3
Cpe05g01383 CCT,CST 47 461 C2C2-CO-like Transcription Factor Family AT5G48250 55.3 1.4e-87 320.5
Cpe15g00673 CCT,CST 1 411 C2C2-CO-like Transcription Factor Family AT5G48250 54.6 1.1e-84 310.8
Cpe04g00659 CCT,CST 1 413 C2C2-CO-like Transcription Factor Family AT5G48250 54.4 5.6e-84 308.5
Cpe16g00362 CST 88 293 C2C2-CO-like Transcription Factor Family AT5G48250 53.6 1.5e-49 194.1
Cpe05g01383 CCT,CST 47 461 C2C2-CO-like Transcription Factor Family AT5G48250 55.3 1.4e-87 320.5
Cpe15g00673 CCT,CST 1 411 C2C2-CO-like Transcription Factor Family AT5G48250 54.6 1.1e-84 310.8
Cpe04g00659 CCT,CST 1 413 C2C2-CO-like Transcription Factor Family AT5G48250 54.4 5.6e-84 308.5
Cpe16g00362 CST 88 293 C2C2-CO-like Transcription Factor Family AT5G48250 53.6 1.5e-49 194.1
Cpe04g00107 CCT,CST,ECH 1 199 C2C2-CO-like Transcription Factor Family AT1G75540 57.6 2.7e-53 206.5
Cpe15g00559 CCT,CST,ECH 1 206 C2C2-CO-like Transcription Factor Family AT1G75540 52.9 1.2e-48 191.0
Cpe01g00595 CST 1 203 C2C2-CO-like Transcription Factor Family AT1G78600 55.2 5.0e-57 218.8
Cpe01g00702 . 1 184 C2C2-CO-like Transcription Factor Family AT2G21320 63.0 1.5e-55 213.0
Cpe14g00516 . 1 193 C2C2-CO-like Transcription Factor Family AT2G21320 58.5 1.1e-53 206.8
Cpe19g00845 CST 1 132 C2C2-CO-like Transcription Factor Family AT2G21320 69.7 4.6e-49 191.4
Cpe10g00649 CST 1 109 C2C2-CO-like Transcription Factor Family AT2G21320 78.9 8.8e-48 187.2
Cpe01g00702 . 1 183 C2C2-CO-like Transcription Factor Family AT4G38960 63.4 3.2e-56 215.3
Cpe14g00516 . 1 192 C2C2-CO-like Transcription Factor Family AT4G38960 61.5 2.7e-55 212.2
Cpe19g00845 CST 1 151 C2C2-CO-like Transcription Factor Family AT4G38960 66.9 1.5e-50 196.4
Cpe10g00649 CST 1 106 C2C2-CO-like Transcription Factor Family AT4G38960 82.1 3.2e-48 188.7
Cpe04g00107 CCT,CST,ECH 1 197 C2C2-CO-like Transcription Factor Family AT4G39070 59.9 1.4e-54 210.3
Cpe15g00559 CCT,CST,ECH 1 201 C2C2-CO-like Transcription Factor Family AT4G39070 55.6 5.9e-50 194.9
Cpe07g00385 CCT,ECH 1 206 C2C2-CO-like Transcription Factor Family AT4G39070 51.0 1.7e-44 176.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003973 3 1 1 3 2 1 2 1 1 2 1 1 2 2 2 2 1 2 2 1 1 1 1 1 1 1 1 2 1 0 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50896 PF00643 zf-B_box 6.70E-07 No_clan Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe18g00605 Cpe_Chr18 FPKM 8.687598 9.382554 21.578382 19.927725 10.013581 9.40108 10.600209 4.780579 5.670311 5.549899