Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe18g00625 ATGGCAGTCTCTTCCCCAACGTTTCGACGCGACAGGTGGGCGAAATTCTTTGCTTTTCCCTCTTTCTCTCTCAAAATCTCTCAACTTCGTATCCTATCCTCCACCAATCTCTGCAAATTTCCTCCCAATCCATGGATTCCTTCATCCACCTTCAATTTCCCGCTGTTTCTCGGTCTCTATTTGTTTCCTTTTGGTGGTAATGTCGTGGATTCATTATGGCTTCCGATTCTTCATCTGAGGGAGGGTCTTAGAAAGGATCCAAACTTCAAAGCTAAGGCTATATGTATTTTAAGGAATCATGTATATGTTTTCTCACAAGTCGAACGAACTGCTCACGATCCATCAAGGTACAGTAAGATGAGTATGGAGGAGAAAAGGAATTTGGTCTATGAAATATCGGATCAGCCAAATGCTTCTGATCTGCTTCAGTCCTGGAGTCCACGGCTACCTGTTCCTGCAAACCATATTCCAATCAGTAGCACTAGGAGTGACTCAAATATTGCAGTATACTGCAGAAATTCGGCATGCAAAGCTACCTTAAACCAAGAGGATAGATTTTGCAAGAGGTGTTCATGCTGCATTTGTTATCAGTATGATGATAATAAGGATCCTAGTCTATGGTTAAGTTGCAGCTCTGACCCACCATTTCAAGACACTTCATGTGGTATGTCATGCCATCTTGAATGTGCATTGAAGCATGAAAAATCTGGGATTTCTAGAGGACTGCGGGCTGGAATTGAAGGGACTTTTTGTTGTTTATCGTGTGGAAAAGTCAATGACTTGCTTGGGTGTTGGAGAAAACAATTGATGAAGGCAAAGGAAACCAGAAGGGTGGATATACTGTGTTACCGCCTCTCTTTAAGCAAAAAGCTTTTGGTTGAAGTTGAAAAGTATCAAGACGTTCATCAGATTGTGGATGAGGCTGTGAAGAAACTTGAAGCTGAAGTGGGTCCTTTGACTGGTGTACCGGTTGGTACGGGCAGGGGCATTGTTAACAGACTTTCTTCAGGACCAGAGGTTCAGAAACTCTGCACGTTAGCCATTGATACACTGGACTCCTTGCTCTCCACGAAGATCTTGCACCAATTGCCCAGTTCCATAATACAAGATACTAATTTGGTTGGTAGAAACTTCGTAAGGTTCGAAGATGTTGATGCAACAAACCTTACAGTGGTTGTGGGTACTGAGGATGTTTCATCTGGAAAAACTGCTGGTTTCAGGATATGGCATCGAAAGGCATGCGAAATAGATTACCCTATGGAGCCAACTTGCACCTTGTCTCAACCCAATTTGAGCTCTGTCGTCCGAGGGCTGACCCCATCTTCAGAATATTATTTCAAAGCCATTTCCTTTGATGAGACAGGAGATTTGGGGATGTGTGAAGTTCAGGTCTCAACTGCTACTGCTCGGGAGGATAACACAGACTGCTTGGTGACTGAAAGGTGTCAGAGTCCTGTGACCAACTTCAGTGAGCTCTCAAATCCATCTTCGGTAGAAGATGAAACTAACAATGTAGTACCTTGTAGCGACCAGACTGACAGTCGAACAGGGAGCTATCTTTCATATTGCAAGGATTCTAACAAGATCTTGACGGCTAACCTGTCTAAGGATGCAATAAACTGCACCGATGTCAGTGGAAGGGGAACGGCAAAAGATTCTGTATCATTGTTGGATGAGGATCACGTTACAAGGAAAAGCTCCATGCTGCCTGATCCCAGTGTTTCAAAACTTGAAGACGGGCATTCCTCTGATGTCCATATCATTGAAGATACAAGCATGAATAACGGGTCAAATTCTGCTATTCAAGAAGGGACTAAATGCGCACCATTTGTTAGCAGCTCTGAGGCTGGATTGCCAGTTACTCCTTGCAAGATGGAAATACTCAAGGATGTTCTTGGAAGGAGTGGTCGATTGAAGTCTAGCGCCAAAGATCGAGAAACAGGGTCGGGAGGAGAGGAACGCCGACATGGCAGAACATCCAAGAAGAGAAGTGCAGAGAGGCAAGATGCTGATTGTGCAGCCAATGGCATATCAGACAAGGATTTTGAGTATTATGTAAAATTGATTAGATGGCTAGAATGCGAGGGGCACATAGAGAAGAACTTCAGACAAAAATTCTTAACCTGGTACAGCTTGAGAGCCACAGCACAGGATGTTAGGATTGTGAAGGCCTTTGTTGATAACTTCATTGAAGATCCATCAGCCCTTGCAGAGCAACTTGTGGATACCTTTTCAGAATGCATTTCAATCAAGAAAACATGCGCTGTGCCTGCTGGATTCTGCATGAAGCTTTGGCATTGA 2301 43.85 MAVSSPTFRRDRWAKFFAFPSFSLKISQLRILSSTNLCKFPPNPWIPSSTFNFPLFLGLYLFPFGGNVVDSLWLPILHLREGLRKDPNFKAKAICILRNHVYVFSQVERTAHDPSRYSKMSMEEKRNLVYEISDQPNASDLLQSWSPRLPVPANHIPISSTRSDSNIAVYCRNSACKATLNQEDRFCKRCSCCICYQYDDNKDPSLWLSCSSDPPFQDTSCGMSCHLECALKHEKSGISRGLRAGIEGTFCCLSCGKVNDLLGCWRKQLMKAKETRRVDILCYRLSLSKKLLVEVEKYQDVHQIVDEAVKKLEAEVGPLTGVPVGTGRGIVNRLSSGPEVQKLCTLAIDTLDSLLSTKILHQLPSSIIQDTNLVGRNFVRFEDVDATNLTVVVGTEDVSSGKTAGFRIWHRKACEIDYPMEPTCTLSQPNLSSVVRGLTPSSEYYFKAISFDETGDLGMCEVQVSTATAREDNTDCLVTERCQSPVTNFSELSNPSSVEDETNNVVPCSDQTDSRTGSYLSYCKDSNKILTANLSKDAINCTDVSGRGTAKDSVSLLDEDHVTRKSSMLPDPSVSKLEDGHSSDVHIIEDTSMNNGSNSAIQEGTKCAPFVSSSEAGLPVTPCKMEILKDVLGRSGRLKSSAKDRETGSGGEERRHGRTSKKRSAERQDADCAANGISDKDFEYYVKLIRWLECEGHIEKNFRQKFLTWYSLRATAQDVRIVKAFVDNFIEDPSALAEQLVDTFSECISIKKTCAVPAGFCMKLWH 766
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 6481914 6488590 + Cp4.1LG18g06160.1 Cpe18g00625 485086
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe18g00625 766 MobiDBLite consensus disorder prediction 488 510 - -
Cpe18g00625 766 PANTHER VIN3-LIKE PROTEIN 2-RELATED 148 766 - -
Cpe18g00625 766 PANTHER VIN3-LIKE PROTEIN 2-RELATED 148 766 IPR044514 GO:0010048|GO:0040029
Cpe18g00625 766 PANTHER VIN3-LIKE PROTEIN 2-RELATED 111 146 IPR044514 GO:0010048|GO:0040029
Cpe18g00625 766 CDD PHD_VIN3_plant 191 255 - -
Cpe18g00625 766 Coils Coil 295 315 - -
Cpe18g00625 766 PANTHER VIN3-LIKE PROTEIN 2-RELATED 111 146 - -
Cpe18g00625 766 MobiDBLite consensus disorder prediction 636 669 - -
Cpe18g00625 766 Pfam PHD - plant homeodomain finger protein 171 289 IPR032881 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe11g00638 Cpe18g00625 CCT
Cpe04g01308 Cpe18g00625 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe11g01102 Cpe-Chr11:9182784 Cpe18g00625 Cpe-Chr18:6481914 4.45E-22 dispersed
Cpe18g00449 Cpe-Chr18:5484303 Cpe18g00625 Cpe-Chr18:6481914 2.69E-22 dispersed
Cpe11g00638 Cpe-Chr11:4123384 Cpe18g00625 Cpe-Chr18:6481914 0 wgd
Cpe18g00625 Cpe-Chr18:6481914 Cpe04g01308 Cpe-Chr4:10755776 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe18g00625 - - csv:101220456 1073.54