Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe18g00640 ATGGATAGTTTCGGAAACGATTGCATGAATTACTTCGGGAGTGATATCTTCATACCAACGGAAGAGCTCGACAGTTGGGGATTCGACGAGCCGGTTTCCGGATACTACGATTCGAGTTCGCCGGAGGGAGTTCTGTCGTCGTCGTCGGCTACGAAGAACATAGCATCGGAGAGGAATAGGAGAAGGAAGCTTAACGAGAGGCTTTTTGCGCTCCGATCGGTCGTTCCTAATATAACTAAGATGGATAAGGCTTCCATTATAAAAGATGCAATCGATTACATCCAAAATTTACATGAGCAAGAGAGGAGGGTTCAAACTGAAATTTCCGAGCTCGAATCAGGAAAGTTTAAGATAACAGGGTGTGAATTTGACCAGGAGATTCCCTTGTTGCTCAGACCTAAGAGGAAGAAAACTGAGAAGTACTTCAGCTATGGATCTCCTGCTTCAAGAACTTCCCCCATTGAAGTCCAGGATCTTAGTGTAACATACATGGGGGGCAGAACATTAGCGGTGAGCATGACATGCTGCAAAAGAGCAGATTCAATGGTTAAACTCTGTGAAGTTTTTGAATCACTGAAGCTCAAGATCATCACTGCCAATATTTCTGCTGTCTCTGGAAGGCTTTTGAAGACTGTCTTCATTGAGGCTGAGAAAGAGGAGAGGGATTACTTGAAAATTAAAATAGAAACAGCAATTGCAGGTCTTAATGATCCACATAGCCCCATGAGCATCTGA 735 43.81 MDSFGNDCMNYFGSDIFIPTEELDSWGFDEPVSGYYDSSSPEGVLSSSSATKNIASERNRRRKLNERLFALRSVVPNITKMDKASIIKDAIDYIQNLHEQERRVQTEISELESGKFKITGCEFDQEIPLLLRPKRKKTEKYFSYGSPASRTSPIEVQDLSVTYMGGRTLAVSMTCCKRADSMVKLCEVFESLKLKIITANISAVSGRLLKTVFIEAEKEERDYLKIKIETAIAGLNDPHSPMSI 244
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 6587133 6591104 - Cp4.1LG18g06380.1 Cpe18g00640 485101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe18g00640 244 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 8 238 - -
Cpe18g00640 244 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 52 113 IPR036638 GO:0046983
Cpe18g00640 244 Pfam Helix-loop-helix DNA-binding domain 52 97 IPR011598 GO:0046983
Cpe18g00640 244 PANTHER TRANSCRIPTION FACTOR BHLH35 8 238 - -
Cpe18g00640 244 Coils Coil 94 114 - -
Cpe18g00640 244 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 48 97 IPR011598 GO:0046983
Cpe18g00640 244 Gene3D - 46 114 IPR036638 GO:0046983
Cpe18g00640 244 SMART finulus 54 103 IPR011598 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe18g00640 Cpe-Chr18:6587133 Cpe04g00453 Cpe-Chr4:5257417 1.05E-19 dispersed
Cpe11g00612 Cpe-Chr11:3860199 Cpe18g00640 Cpe-Chr18:6587133 1.60E-84 wgd
Cpe18g00640 Cpe-Chr18:6587133 Cpe04g01327 Cpe-Chr4:10890505 1.13E-124 wgd
Cpe18g00640 Cpe-Chr18:6587133 Cpe07g00759 Cpe-Chr7:6626873 3.48E-70 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50900 PF00010 HLH 4.80E-12 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe18g00640 - - cmo:103494233 364.77