Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe18g00686 ATGTCTCGCCGCAGCCACTTCGACGGCGGTGACAAGGAGCTTCCCGCCAGCGAGGAAGACGATGAAGATGATCTGGTTGATGATGACATGGAAACCCTCCGAAGAGCGTGCAGGCTTGCTGGAGTTAATCATGAGGATTATATCAATCCCCGGCTTTCGTTGCCTGCCGCCGGAGATGCTAATCTAGGTTCTGATTCTGATGATGTTGATGATCTCGAACTTCTTCGGAATATTCAGAACCGGTTCTCGATTGCGGCCGATGAGCAGCCGCTGAGTATTCTCCCACCGGTTACCGCGGACGAGGAGGAAGATGATTTCGAGATGCTACGTTCGATTCAGCGGCGCTTTGCGGCGTATGAAAGTGATATTTTGAGCAATAAACCTGATCAATCTTGTGACTTGGATGGGCCTCTAAAGATGGATTCTGAGAACACAGATGTTGAAAGATTGACATCCTCAGAAAGGTCATCCATGATAGCCTTTGAAAAGGGAAGCTTGCCAAAGGCTGCTTTGGCTTTTATTGATGCCATCAAGAAGAATAGGTCCCAGCAGAAGTTTATTCGTAGTAAGATGATTCATCTTGAGGCTAGAATTGAGGAGAACAAAAAACTCAGAAAACGTTTCAAAGTTCTCAAAGGTTTCCAGGGTTCATGTAGACGAAAAACAACTTGTGCCCTGACTCAGATGGTAGATCCTCGAGTCCAGTTAATATCAGCTGGAAAACCACAGGCAAAGGATTCATCAAAGAAGGACAAACGATTATCTTCAATGTGTTATGGCCCAGCTGAGAATTCTCATGTTGCTTGCTACAGAACAGCATGGACAAAGTTTCATCCTGTAGATCGAAAAAGATGGTCCAATTTTGAAAGGGAGAATCTAGGCAAGGGAATAAGACAGCAATTCCAGGAGATGGTGCTTCAGATTTCAGTGGATCAAATTAGTGAGATACAAGGATTTTCAGCAGAATCAGATGATCTGGATAACATTCTTGCATCAATAAAAGGCCTCGACATCACTCCTGAAAAGATTAGGGAATTTCTGCCAAAAGTTAATTGGGACAAATTGGCTTCCATGTATCTTCGGGGTCGTTCAGGGGCAGAATGTGAAGCGAGGTGGTTGAATTTTGAAGATCCCCTAATTAACCGGAATCCATGGACTACAAGTGAGGATAAGAATCTTTTGTTTACTATCCAACAGAAAGGATTGAATAACTGGATTGAACTGGCAGTTTCGTTGGGAACAAACAGAACTCCTTTTCAGTGCTTGTCTCGGTATCAAAGGAGTTTAAACGCTTCCATATTAAAGAGTGAGTGGACTAAAGATGAGGATGATAAACTTCGATCTGCTGTTGCTGTATTTGGTGAGGGAGATTGGCAGGCCGTAGCTTCTACTTTGGAAGGGCGAACTGGTCCACAGTGCTCTAATAGGTGGAAAAAATCCCTTGATCCAGCTAGGACAAAAAGAGGCTATTTCACTCCAGATGAAGACAGTCGCTTGAAAATTGCTGTACTGCTTTTTGGGCCTAAAAATTGGAACAAGAAAGCAGAATTTTTACCTGGCCGAAATCAAGTTCAATGCAGAGAAAGATGGTTCAATTGTTTAGATCCTTCCTTGAGAAGATGTGAATGGACAGAAGAGGAGGATCTAAGGCTAGAGATAGCAATTCAGGAACATGGATATAGCTGGGCTAAGGTAGCTGCATGCGTGCCATCACGTACAGATAATGAGTGCCGGAGGAGATGGAAGAAGTTATTTCCCAATCAAGTTCCTTTGCTCCAGGAAGCTAGAAAGATTCAGAAGGTTGCTCTTATCAGCAACTTTGTTGATAGGGAATCCGAGCGGCCTGCTCTTGGTCCTACTGACTTTCGACCTGTACCTAATTCACATTTATTATGTAATACTGATGATCCAGAAACTGCCCCAAAAAGAAATGTGAGGACGAGAAGGATGCCAGTGTCAAGGAATGAAAAGAGTGCTAATGGTGATGCTCCAAAGAGGAGGAAATCAAATAACCAGAGGAATCGAGCTGATGAAACGGCTCAGGTGGATTTTGGAAATAATACATCTTCTGTCCCAGAGGTTAAATCTACAAAACCTCAAAGAAAACGAACTAGACATGGAGCTTATACCACTAGGAGGAAAGGGGCTCCGAAGATAGGTTGTAATAGTGAGAGATGTGCAGAACAGAATTCGGACACTCGGAGCGTTGAGGTGCAGTTGAATTGCAAGGAACCAGCAGAGAGGATCAACAGTGACTGCCCTGAGACTGTTGATGAGAATGGTATGGAGGTATTTGAGAACAAAGCTGCAGAGATGCATTCTGAAGGAGTTGTATGCTTTTCAGAACAAGAAGAAAATCAAAACTCTACCGGATCTTCTGGGGTGTCCGTACTGTCAGAAATGACTAATGACATGGACGAATATAACCCTTCTACTCTTCCTGATACAACGTTGCTGGCTAGTATTACTGCGGATGATATTATAGAAACGAAGGGCGTGAACGTTGCAGACAAAGATCTGGATGACAGTAACAGTTTCTCATTACCACAAAGTTGCTTAGAACTCAGGACAACTGACAGTGAAGGTGTTGACAGCTATTCTGTGGATGAATTCACTGATAAAAGCCATGGGGTTTGCAAGCCCCAAGGCAGAAGGAAGAAAAATAGCAAAAGATCAAATAAGAGCCAGGACTCGTTGGTTTCTTGTCAACAAGCAGAGCTGGAGATGTCTGGGACGAATGAGCTTCATCGTTGTAATCAATCAAAGAAGAGAAAGCATAGCGGTACAAATACGAGTCCATTAGGAACAATGGAAGCCGTTGAAGAGGTTGATGACTGCACTCTCCAGGGCTTTTTGCAAAAAAGATTGAAGAGGACGACAACCACACATGACAAGAAAGTGGATGGCAGTTCAAGCACTCCCCCTGAAGTTGATAATGACGACAATGATCCAACCCTTGCCTTGCTTCTCAATGATAAATTGAAGAGAAAAAAGCATTAA 3000 43.53 MSRRSHFDGGDKELPASEEDDEDDLVDDDMETLRRACRLAGVNHEDYINPRLSLPAAGDANLGSDSDDVDDLELLRNIQNRFSIAADEQPLSILPPVTADEEEDDFEMLRSIQRRFAAYESDILSNKPDQSCDLDGPLKMDSENTDVERLTSSERSSMIAFEKGSLPKAALAFIDAIKKNRSQQKFIRSKMIHLEARIEENKKLRKRFKVLKGFQGSCRRKTTCALTQMVDPRVQLISAGKPQAKDSSKKDKRLSSMCYGPAENSHVACYRTAWTKFHPVDRKRWSNFERENLGKGIRQQFQEMVLQISVDQISEIQGFSAESDDLDNILASIKGLDITPEKIREFLPKVNWDKLASMYLRGRSGAECEARWLNFEDPLINRNPWTTSEDKNLLFTIQQKGLNNWIELAVSLGTNRTPFQCLSRYQRSLNASILKSEWTKDEDDKLRSAVAVFGEGDWQAVASTLEGRTGPQCSNRWKKSLDPARTKRGYFTPDEDSRLKIAVLLFGPKNWNKKAEFLPGRNQVQCRERWFNCLDPSLRRCEWTEEEDLRLEIAIQEHGYSWAKVAACVPSRTDNECRRRWKKLFPNQVPLLQEARKIQKVALISNFVDRESERPALGPTDFRPVPNSHLLCNTDDPETAPKRNVRTRRMPVSRNEKSANGDAPKRRKSNNQRNRADETAQVDFGNNTSSVPEVKSTKPQRKRTRHGAYTTRRKGAPKIGCNSERCAEQNSDTRSVEVQLNCKEPAERINSDCPETVDENGMEVFENKAAEMHSEGVVCFSEQEENQNSTGSSGVSVLSEMTNDMDEYNPSTLPDTTLLASITADDIIETKGVNVADKDLDDSNSFSLPQSCLELRTTDSEGVDSYSVDEFTDKSHGVCKPQGRRKKNSKRSNKSQDSLVSCQQAELEMSGTNELHRCNQSKKRKHSGTNTSPLGTMEAVEEVDDCTLQGFLQKRLKRTTTTHDKKVDGSSSTPPEVDNDDNDPTLALLLNDKLKRKKH 999
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 6847393 6856926 + Cp4.1LG18g06780.1 Cpe18g00686 485147

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe18g00686 999 ProSiteProfiles Myb-like domain profile. 377 429 IPR001005 -
Cpe18g00686 999 MobiDBLite consensus disorder prediction 675 695 - -
Cpe18g00686 999 MobiDBLite consensus disorder prediction 873 937 - -
Cpe18g00686 999 ProSiteProfiles Myb-like domain profile. 535 585 IPR001005 -
Cpe18g00686 999 SUPERFAMILY Homeodomain-like 414 485 IPR009057 -
Cpe18g00686 999 MobiDBLite consensus disorder prediction 957 999 - -
Cpe18g00686 999 Gene3D - 542 588 - -
Cpe18g00686 999 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 487 534 IPR017930 -
Cpe18g00686 999 ProSiteProfiles Myb-like domain profile. 483 534 IPR001005 -
Cpe18g00686 999 CDD SANT 542 585 IPR001005 -
Cpe18g00686 999 Gene3D - 433 485 - -
Cpe18g00686 999 MobiDBLite consensus disorder prediction 1 27 - -
Cpe18g00686 999 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 535 589 IPR017930 -
Cpe18g00686 999 CDD SANT 437 481 IPR001005 -
Cpe18g00686 999 MobiDBLite consensus disorder prediction 894 916 - -
Cpe18g00686 999 CDD SANT 491 532 IPR001005 -
Cpe18g00686 999 ProSiteProfiles Myb-like domain profile. 430 481 IPR001005 -
Cpe18g00686 999 SUPERFAMILY Homeodomain-like 358 430 IPR009057 -
Cpe18g00686 999 Gene3D - 379 429 - -
Cpe18g00686 999 SUPERFAMILY Homeodomain-like 485 581 IPR009057 -
Cpe18g00686 999 MobiDBLite consensus disorder prediction 639 674 - -
Cpe18g00686 999 Pfam Myb-like DNA-binding domain 438 499 - -
Cpe18g00686 999 Pfam Myb-like DNA-binding domain 382 427 IPR001005 -
Cpe18g00686 999 Pfam Myb-like DNA-binding domain 541 584 IPR001005 -
Cpe18g00686 999 MobiDBLite consensus disorder prediction 613 720 - -
Cpe18g00686 999 PANTHER SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4 17 934 - -
Cpe18g00686 999 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 430 485 IPR017930 -
Cpe18g00686 999 SMART sant 487 536 IPR001005 -
Cpe18g00686 999 SMART sant 434 483 IPR001005 -
Cpe18g00686 999 SMART sant 539 587 IPR001005 -
Cpe18g00686 999 SMART sant 281 378 IPR001005 -
Cpe18g00686 999 SMART sant 381 431 IPR001005 -
Cpe18g00686 999 MobiDBLite consensus disorder prediction 957 971 - -
Cpe18g00686 999 Gene3D - 486 539 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe18g00686 K09422 MYBP; transcription factor MYB, plant - csv:101216287 1492.25
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe18g00686 Cpe-Chr18:6847393 Cpe11g00526 Cpe-Chr11:3114399 6.01E-13 dispersed
Cpe18g00686 Cpe-Chr18:6847393 Cpe03g00117 Cpe-Chr3:598321 2.12E-14 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe04g00013 CST 1 847 MYB-Related Transcription Factor Family AT1G09770 76.9 0.0e+00 1218.4
Cpe05g00838 CST 1 825 MYB-Related Transcription Factor Family AT1G09770 77.4 0.0e+00 1198.0
Cpe18g00686 . 165 630 MYB-Related Transcription Factor Family AT3G18100 55.3 2.7e-148 523.1
Cpe18g00686 . 165 630 MYB-Related Transcription Factor Family AT3G18100 55.3 2.7e-148 523.1
Cpe04g00013 CST 1 847 MYB-Related Transcription Factor Family AT1G09770 76.9 0.0e+00 1218.4
Cpe05g00838 CST 1 825 MYB-Related Transcription Factor Family AT1G09770 77.4 0.0e+00 1198.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002922 1 9 2 2 1 2 1 1 1 1 3 3 1 1 1 1 3 1 1 1 1 1 1 2 2 2 1 3 1 1 52
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50903 PF13921 Myb_DNA-bind_6 2.80E-11 CL0123 Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe18g00686 Cpe_Chr18 FPKM 2.778846 3.534501 2.898688 1.764996 3.55769 3.193077 2.312176 6.470572 6.60275 6.505995