Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe18g00686 ATGTCTCGCCGCAGCCACTTCGACGGCGGTGACAAGGAGCTTCCCGCCAGCGAGGAAGACGATGAAGATGATCTGGTTGATGATGACATGGAAACCCTCCGAAGAGCGTGCAGGCTTGCTGGAGTTAATCATGAGGATTATATCAATCCCCGGCTTTCGTTGCCTGCCGCCGGAGATGCTAATCTAGGTTCTGATTCTGATGATGTTGATGATCTCGAACTTCTTCGGAATATTCAGAACCGGTTCTCGATTGCGGCCGATGAGCAGCCGCTGAGTATTCTCCCACCGGTTACCGCGGACGAGGAGGAAGATGATTTCGAGATGCTACGTTCGATTCAGCGGCGCTTTGCGGCGTATGAAAGTGATATTTTGAGCAATAAACCTGATCAATCTTGTGACTTGGATGGGCCTCTAAAGATGGATTCTGAGAACACAGATGTTGAAAGATTGACATCCTCAGAAAGGTCATCCATGATAGCCTTTGAAAAGGGAAGCTTGCCAAAGGCTGCTTTGGCTTTTATTGATGCCATCAAGAAGAATAGGTCCCAGCAGAAGTTTATTCGTAGTAAGATGATTCATCTTGAGGCTAGAATTGAGGAGAACAAAAAACTCAGAAAACGTTTCAAAGTTCTCAAAGGTTTCCAGGGTTCATGTAGACGAAAAACAACTTGTGCCCTGACTCAGATGGTAGATCCTCGAGTCCAGTTAATATCAGCTGGAAAACCACAGGCAAAGGATTCATCAAAGAAGGACAAACGATTATCTTCAATGTGTTATGGCCCAGCTGAGAATTCTCATGTTGCTTGCTACAGAACAGCATGGACAAAGTTTCATCCTGTAGATCGAAAAAGATGGTCCAATTTTGAAAGGGAGAATCTAGGCAAGGGAATAAGACAGCAATTCCAGGAGATGGTGCTTCAGATTTCAGTGGATCAAATTAGTGAGATACAAGGATTTTCAGCAGAATCAGATGATCTGGATAACATTCTTGCATCAATAAAAGGCCTCGACATCACTCCTGAAAAGATTAGGGAATTTCTGCCAAAAGTTAATTGGGACAAATTGGCTTCCATGTATCTTCGGGGTCGTTCAGGGGCAGAATGTGAAGCGAGGTGGTTGAATTTTGAAGATCCCCTAATTAACCGGAATCCATGGACTACAAGTGAGGATAAGAATCTTTTGTTTACTATCCAACAGAAAGGATTGAATAACTGGATTGAACTGGCAGTTTCGTTGGGAACAAACAGAACTCCTTTTCAGTGCTTGTCTCGGTATCAAAGGAGTTTAAACGCTTCCATATTAAAGAGTGAGTGGACTAAAGATGAGGATGATAAACTTCGATCTGCTGTTGCTGTATTTGGTGAGGGAGATTGGCAGGCCGTAGCTTCTACTTTGGAAGGGCGAACTGGTCCACAGTGCTCTAATAGGTGGAAAAAATCCCTTGATCCAGCTAGGACAAAAAGAGGCTATTTCACTCCAGATGAAGACAGTCGCTTGAAAATTGCTGTACTGCTTTTTGGGCCTAAAAATTGGAACAAGAAAGCAGAATTTTTACCTGGCCGAAATCAAGTTCAATGCAGAGAAAGATGGTTCAATTGTTTAGATCCTTCCTTGAGAAGATGTGAATGGACAGAAGAGGAGGATCTAAGGCTAGAGATAGCAATTCAGGAACATGGATATAGCTGGGCTAAGGTAGCTGCATGCGTGCCATCACGTACAGATAATGAGTGCCGGAGGAGATGGAAGAAGTTATTTCCCAATCAAGTTCCTTTGCTCCAGGAAGCTAGAAAGATTCAGAAGGTTGCTCTTATCAGCAACTTTGTTGATAGGGAATCCGAGCGGCCTGCTCTTGGTCCTACTGACTTTCGACCTGTACCTAATTCACATTTATTATGTAATACTGATGATCCAGAAACTGCCCCAAAAAGAAATGTGAGGACGAGAAGGATGCCAGTGTCAAGGAATGAAAAGAGTGCTAATGGTGATGCTCCAAAGAGGAGGAAATCAAATAACCAGAGGAATCGAGCTGATGAAACGGCTCAGGTGGATTTTGGAAATAATACATCTTCTGTCCCAGAGGTTAAATCTACAAAACCTCAAAGAAAACGAACTAGACATGGAGCTTATACCACTAGGAGGAAAGGGGCTCCGAAGATAGGTTGTAATAGTGAGAGATGTGCAGAACAGAATTCGGACACTCGGAGCGTTGAGGTGCAGTTGAATTGCAAGGAACCAGCAGAGAGGATCAACAGTGACTGCCCTGAGACTGTTGATGAGAATGGTATGGAGGTATTTGAGAACAAAGCTGCAGAGATGCATTCTGAAGGAGTTGTATGCTTTTCAGAACAAGAAGAAAATCAAAACTCTACCGGATCTTCTGGGGTGTCCGTACTGTCAGAAATGACTAATGACATGGACGAATATAACCCTTCTACTCTTCCTGATACAACGTTGCTGGCTAGTATTACTGCGGATGATATTATAGAAACGAAGGGCGTGAACGTTGCAGACAAAGATCTGGATGACAGTAACAGTTTCTCATTACCACAAAGTTGCTTAGAACTCAGGACAACTGACAGTGAAGGTGTTGACAGCTATTCTGTGGATGAATTCACTGATAAAAGCCATGGGGTTTGCAAGCCCCAAGGCAGAAGGAAGAAAAATAGCAAAAGATCAAATAAGAGCCAGGACTCGTTGGTTTCTTGTCAACAAGCAGAGCTGGAGATGTCTGGGACGAATGAGCTTCATCGTTGTAATCAATCAAAGAAGAGAAAGCATAGCGGTACAAATACGAGTCCATTAGGAACAATGGAAGCCGTTGAAGAGGTTGATGACTGCACTCTCCAGGGCTTTTTGCAAAAAAGATTGAAGAGGACGACAACCACACATGACAAGAAAGTGGATGGCAGTTCAAGCACTCCCCCTGAAGTTGATAATGACGACAATGATCCAACCCTTGCCTTGCTTCTCAATGATAAATTGAAGAGAAAAAAGCATTAA 3000 43.53 MSRRSHFDGGDKELPASEEDDEDDLVDDDMETLRRACRLAGVNHEDYINPRLSLPAAGDANLGSDSDDVDDLELLRNIQNRFSIAADEQPLSILPPVTADEEEDDFEMLRSIQRRFAAYESDILSNKPDQSCDLDGPLKMDSENTDVERLTSSERSSMIAFEKGSLPKAALAFIDAIKKNRSQQKFIRSKMIHLEARIEENKKLRKRFKVLKGFQGSCRRKTTCALTQMVDPRVQLISAGKPQAKDSSKKDKRLSSMCYGPAENSHVACYRTAWTKFHPVDRKRWSNFERENLGKGIRQQFQEMVLQISVDQISEIQGFSAESDDLDNILASIKGLDITPEKIREFLPKVNWDKLASMYLRGRSGAECEARWLNFEDPLINRNPWTTSEDKNLLFTIQQKGLNNWIELAVSLGTNRTPFQCLSRYQRSLNASILKSEWTKDEDDKLRSAVAVFGEGDWQAVASTLEGRTGPQCSNRWKKSLDPARTKRGYFTPDEDSRLKIAVLLFGPKNWNKKAEFLPGRNQVQCRERWFNCLDPSLRRCEWTEEEDLRLEIAIQEHGYSWAKVAACVPSRTDNECRRRWKKLFPNQVPLLQEARKIQKVALISNFVDRESERPALGPTDFRPVPNSHLLCNTDDPETAPKRNVRTRRMPVSRNEKSANGDAPKRRKSNNQRNRADETAQVDFGNNTSSVPEVKSTKPQRKRTRHGAYTTRRKGAPKIGCNSERCAEQNSDTRSVEVQLNCKEPAERINSDCPETVDENGMEVFENKAAEMHSEGVVCFSEQEENQNSTGSSGVSVLSEMTNDMDEYNPSTLPDTTLLASITADDIIETKGVNVADKDLDDSNSFSLPQSCLELRTTDSEGVDSYSVDEFTDKSHGVCKPQGRRKKNSKRSNKSQDSLVSCQQAELEMSGTNELHRCNQSKKRKHSGTNTSPLGTMEAVEEVDDCTLQGFLQKRLKRTTTTHDKKVDGSSSTPPEVDNDDNDPTLALLLNDKLKRKKH 999
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 6847393 6856926 + Cp4.1LG18g06780.1 Cpe18g00686 485147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe18g00686 999 ProSiteProfiles Myb-like domain profile. 377 429 IPR001005 -
Cpe18g00686 999 MobiDBLite consensus disorder prediction 675 695 - -
Cpe18g00686 999 MobiDBLite consensus disorder prediction 873 937 - -
Cpe18g00686 999 ProSiteProfiles Myb-like domain profile. 535 585 IPR001005 -
Cpe18g00686 999 SUPERFAMILY Homeodomain-like 414 485 IPR009057 -
Cpe18g00686 999 MobiDBLite consensus disorder prediction 957 999 - -
Cpe18g00686 999 Gene3D - 542 588 - -
Cpe18g00686 999 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 487 534 IPR017930 -
Cpe18g00686 999 ProSiteProfiles Myb-like domain profile. 483 534 IPR001005 -
Cpe18g00686 999 CDD SANT 542 585 IPR001005 -
Cpe18g00686 999 Gene3D - 433 485 - -
Cpe18g00686 999 MobiDBLite consensus disorder prediction 1 27 - -
Cpe18g00686 999 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 535 589 IPR017930 -
Cpe18g00686 999 CDD SANT 437 481 IPR001005 -
Cpe18g00686 999 MobiDBLite consensus disorder prediction 894 916 - -
Cpe18g00686 999 CDD SANT 491 532 IPR001005 -
Cpe18g00686 999 ProSiteProfiles Myb-like domain profile. 430 481 IPR001005 -
Cpe18g00686 999 SUPERFAMILY Homeodomain-like 358 430 IPR009057 -
Cpe18g00686 999 Gene3D - 379 429 - -
Cpe18g00686 999 SUPERFAMILY Homeodomain-like 485 581 IPR009057 -
Cpe18g00686 999 MobiDBLite consensus disorder prediction 639 674 - -
Cpe18g00686 999 Pfam Myb-like DNA-binding domain 438 499 - -
Cpe18g00686 999 Pfam Myb-like DNA-binding domain 382 427 IPR001005 -
Cpe18g00686 999 Pfam Myb-like DNA-binding domain 541 584 IPR001005 -
Cpe18g00686 999 MobiDBLite consensus disorder prediction 613 720 - -
Cpe18g00686 999 PANTHER SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4 17 934 - -
Cpe18g00686 999 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 430 485 IPR017930 -
Cpe18g00686 999 SMART sant 487 536 IPR001005 -
Cpe18g00686 999 SMART sant 434 483 IPR001005 -
Cpe18g00686 999 SMART sant 539 587 IPR001005 -
Cpe18g00686 999 SMART sant 281 378 IPR001005 -
Cpe18g00686 999 SMART sant 381 431 IPR001005 -
Cpe18g00686 999 MobiDBLite consensus disorder prediction 957 971 - -
Cpe18g00686 999 Gene3D - 486 539 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe18g00686 Cpe-Chr18:6847393 Cpe11g00526 Cpe-Chr11:3114399 6.01E-13 dispersed
Cpe18g00686 Cpe-Chr18:6847393 Cpe03g00117 Cpe-Chr3:598321 2.12E-14 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50903 PF13921 Myb_DNA-bind_6 2.80E-11 CL0123 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe18g00686 K09422 - csv:101216287 1492.25