Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe18g00697 ATGGCGACGCCGTTGACAGGGCTACATCACAGGGACGGTGGCGGAGGGGTGGCTTTTTTGGCTAATTCTGTTAATAAAATGGATTCCGCGTCGGCTCCGTCGTCGCCGAATGATTGTTTGAGGAGCTCCGAGCCACAGTCTCCGATTCTTATTTTCCTTTTCTTCCACAAAGCTATTCGCAAAGAGCTCGATACGCTACACCGGCTGGCCATGGCATTTGCCATCGGCCAGAGAGCAGATATTCGGCCGCTATTTGAACGATATCATTTTCTTAGATCGATTTACAAGCACCACTCCAATGCTGAAGACGAGGTAATTTTTCCTGCACTTGATATTCGTGTGAAGAATGTGGCACAGACATATTCCCTTGAACACAAGGGTGAAAGCAATCTGTTTGATCAACTTTTTGAGCTTCTTAATTCGAATACACGAAATGATGAAAGCTTCCCAAGGGAGTTAGCGTCCTGCACTGGTGCCCTAAAGACATCTGTGAGCCAGCACATGGCTAAGGAAGAAGAGCAGGTATTTCCCTTGCTTATAGAAAAGTTCACATTGGAAGAGCAGGCATCTCTCGTTTGGCAGTTCTTCTGCAGTATTCCTGTGTACATGATGGCTCAATTCCTCCCTTGGCTTTCTTCATCTGTTTCACCTGATGAATTTCAGGATCTACAGAAATGTTTAACTAATGTAGTCCCCGAGGAAAAGCTTCTTCAACAGGTCATATTTACTTGGATGGAAGAGAGAAGTTGTGACACCGTATCAACAAGTTGCTTTGATGATTCTCCAGTTCTACATCATTCAGATCCTACTACTCATACATCAAATCATCAAGGAAATGTAAATTGTGCTTGTGCATTGACCAGCCATGGGAAAAGGAAATATTTGGAGTCCAGTTCTGATACATCAGATTATGTGGTAACTCATCCAATTAATGAAATACTGTTTTGGCATAATGCCATCGAAAGGGAGTTGAATGACATAGCTGAGGAGGCTAGGAAGATACAACTTTCTGGGAAGTTTAGTAATCTATCAACTTTCAACGAGAGGTTGCAATTCATTGCTGAAGTTTGCATTTATCATAGTATTGCTGAGGACAAGGTAATCTTTCCTGCAGTAGATGGAGAGTTTTCTTTTTTCCAGGAACATGCTGAAGAAGAAAGTCAATTCAATGAGTTTAGTTGCCTGATTGAAAATATTCAAAGGGCAGGGGCTAGTTCTACTTCAAGAGATGAATTTTACGTGAAGTTGTGTTCTCATGCTGATCAAATAATAGATACCATTAAGAGGCACTTCCATAATGAAGAAGTTCAGGTTCTTCCACTTGCTAGAAAGCACTTTAGTTGCAAGAGACAACGGGAATTGTTGTATCAAAGTTTGTGTATGATGCCTCTGAAACTGATTGAACGAGTCTTGCCATGGCTGGTAGGATCATTAAAAGAAGATGAGGCTAGAGATTTTCTCAAGAACATGCAGTTGGCAGCTCCAGCTAAAGATACTGCTTTGGTGACTCTCTTTTCTGGTTGGGCTTGCAAGGCCCGCAATGATGGTTTGTGCATATCTTCAAGAGCAGCTGGCTGTTGTGCAGTTCAAAGGTTACCTGATATTGAAGAAGACACTGTTCAATCGTCTTGTTCATGTGCCCCTGCATTGATTGCAAGGGAAGGTCCAAAATCCGATCCAGAAGAAACTAATGTTCATGTTAAGAGGCCAGCCATACGGAATGTTCCTATGTCATGCAGACTTTGTGATGGCCGTATTGCTTCAGAGACCGTTAATGCCCAGCAACAATGTTGTGGTGATCAGTCCTGCCGTGTTCCAGCTTTAGGAGTAAACAGCAAGAATCTGGGGTTAAGTTCTATTTTCTCATCCAAGTCTATGCGATCCTTATCTCCCAGCTCTTGTGCACCTTCTCTCAATTCCAGCCTTTTTTCATGGGAAACGGATAATGCCACTTCTGATGTTGGGTCTGCAGGACGTCCCATTGATACTATTTTTAAATTTCACAAAGCGATACGCAAAGACTTAGAATATTTAGATGTTGAATCTGGAAAACTTGGTGATTGTGATGGAACATTTCTCCGGCAATTTATTGGAAGATTTCGCCTTCTATGGGGGTTATATCGCGCTCATAGTAATGCTGAAGATGATATTGTATTTCCTGCTCTGGAATCCAAAGAGACATTGCACAATGTAAGTCACTCATATACGCTCGACCATAAGCAGGAGGAAAAACTATTTGAGGATATTTCATGTGTTCTCTCTGAGATTTCACTCCTTCATGAAAGTCTGCATGAGGTTCAGTTAGATGAGAGTTATTCTAGAAGTGACGTAGGTTCTGTTAATATGGCGGGGAAGGATTGTAATAGAATGTACAACGAGCTTGCTACAAAGCTTCAAGGAATGTGCAAATCTATAAGAGTTACCCTGGATCAGCATATTTTTAGGGAAGAACTTGAACTTTGGCCGCTGTTTGGGAAACACTTTTCCGTCGAGGAGCAAGACAAAATAGTTGGTCGTATTATTGGGACAACAGGTGCTGAAGTTCTCCAGTCAATGTTGCCATGGGTAACATCTGCACTTACTCAAGACGAACAGAATACCATGATGGATACGTGGAAGCAGGCCACGAGAAACACCATGTTCAACGAATGGCTCAACGATTGTTGGAGAGGGACTGCTTCGTCTACTTTAAATGGTGAAACATCGGAAGCTTGTGTTGCCGAGAAAGATTCTGGGCTCATTGAGAGCTTGGATCAGAATGATCAAATGTTCAAGCCTGGCTGGAAAGATATTTTTCGCATGAACCAAAATGAACTTGAATCAGAAATCAGAAAGGTTTATCAGGACTCGACTCTTGATCCAAGGAGAAAAGCATATCTTGTGCAGAATCTTATGACCAGTCGCTGGATTGCTGCACAGCAGAAATTGCCTCAAGCAAACATAGAAGACAATTCCAATGGTGAAGATGCAGCAGGACGAACACCATCTTTTCGCTGTGTCGAGAAAAAAATATTTGGGTGTGAACATTACACTAGAAACTGCAAGCTTCTTGCTGCTTGCTGCGGAAAGTTATTTACTTGTCGATTTTGTCATGATAATGTCAGCGATCACTCAATGGACAGGAAAGCAACATCAGAGATGATGTGTATGAACTGTCTAACAATTCAATCAGTTGGGCCAGTATGCACTACACCTTCTTGCAATGGATTATCAATGGCGAAATACTATTGCAATATTTGTAAATTTTTTGATGATGAAAGGACTGTGTATCATTGCCCATTTTGCAACTTATGCCGTGTTGGGAAGGGTCTTGGAATTGATTTTTTCCATTGCATGATTTGCAATTGTTGCCTTGGGATAAAGCTGGAGAGTCACAAGTGCCTGGAGAAAAGTTTAGAAACGAATTGTCCCATCTGTTGTGATTTCTTATTTACATCCAGTGCAACAGTCAGACCGCTACCCTGTGGTCATTACATGCATTCAGCTTGCTTTCAGGCCTACACTTGCAGCCATTATACCTGTCCTATTTGCAGCAAGTCCTTGGGAGATATGGCGGTTTATTTTGGCATGCTTGATGCCTTGTTGGCTGCTGAGGAGCTGCCAGAGGAGTACAGGGAACGTTGCCAGGACATACTGTGCAATGACTGTGAACGGAAAGGCACATCGCGGTTCCATTGGCTATATCATAAATGCGAGTTCTGCGGATCATACAACACCCGGGTAATCAAGAACGATGCCGCATATGCCGCTGAATGCCCCTCTTCCAATCAGTGA 3774 42.58 MATPLTGLHHRDGGGGVAFLANSVNKMDSASAPSSPNDCLRSSEPQSPILIFLFFHKAIRKELDTLHRLAMAFAIGQRADIRPLFERYHFLRSIYKHHSNAEDEVIFPALDIRVKNVAQTYSLEHKGESNLFDQLFELLNSNTRNDESFPRELASCTGALKTSVSQHMAKEEEQVFPLLIEKFTLEEQASLVWQFFCSIPVYMMAQFLPWLSSSVSPDEFQDLQKCLTNVVPEEKLLQQVIFTWMEERSCDTVSTSCFDDSPVLHHSDPTTHTSNHQGNVNCACALTSHGKRKYLESSSDTSDYVVTHPINEILFWHNAIERELNDIAEEARKIQLSGKFSNLSTFNERLQFIAEVCIYHSIAEDKVIFPAVDGEFSFFQEHAEEESQFNEFSCLIENIQRAGASSTSRDEFYVKLCSHADQIIDTIKRHFHNEEVQVLPLARKHFSCKRQRELLYQSLCMMPLKLIERVLPWLVGSLKEDEARDFLKNMQLAAPAKDTALVTLFSGWACKARNDGLCISSRAAGCCAVQRLPDIEEDTVQSSCSCAPALIAREGPKSDPEETNVHVKRPAIRNVPMSCRLCDGRIASETVNAQQQCCGDQSCRVPALGVNSKNLGLSSIFSSKSMRSLSPSSCAPSLNSSLFSWETDNATSDVGSAGRPIDTIFKFHKAIRKDLEYLDVESGKLGDCDGTFLRQFIGRFRLLWGLYRAHSNAEDDIVFPALESKETLHNVSHSYTLDHKQEEKLFEDISCVLSEISLLHESLHEVQLDESYSRSDVGSVNMAGKDCNRMYNELATKLQGMCKSIRVTLDQHIFREELELWPLFGKHFSVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQDEQNTMMDTWKQATRNTMFNEWLNDCWRGTASSTLNGETSEACVAEKDSGLIESLDQNDQMFKPGWKDIFRMNQNELESEIRKVYQDSTLDPRRKAYLVQNLMTSRWIAAQQKLPQANIEDNSNGEDAAGRTPSFRCVEKKIFGCEHYTRNCKLLAACCGKLFTCRFCHDNVSDHSMDRKATSEMMCMNCLTIQSVGPVCTTPSCNGLSMAKYYCNICKFFDDERTVYHCPFCNLCRVGKGLGIDFFHCMICNCCLGIKLESHKCLEKSLETNCPICCDFLFTSSATVRPLPCGHYMHSACFQAYTCSHYTCPICSKSLGDMAVYFGMLDALLAAEELPEEYRERCQDILCNDCERKGTSRFHWLYHKCEFCGSYNTRVIKNDAAYAAECPSSNQ 1257
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 6931390 6940971 + Cp4.1LG18g06990.1 Cpe18g00697 485158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe18g00697 1257 CDD Hr-like 51 177 - -
Cpe18g00697 1257 Gene3D nmb1532 protein domain like 655 885 - -
Cpe18g00697 1257 SUPERFAMILY RING/U-box 1135 1181 - -
Cpe18g00697 1257 SUPERFAMILY CHY zinc finger-like 1001 1063 IPR037274 GO:0008270
Cpe18g00697 1257 Pfam Hemerythrin HHE cation binding domain 660 823 IPR012312 -
Cpe18g00697 1257 Pfam Hemerythrin HHE cation binding domain 308 442 IPR012312 -
Cpe18g00697 1257 Pfam Hemerythrin HHE cation binding domain 53 179 IPR012312 -
Cpe18g00697 1257 SUPERFAMILY Zinc hairpin stack 1073 1129 IPR037275 -
Cpe18g00697 1257 ProSiteProfiles Zinc finger RING-type profile. 1136 1178 IPR001841 -
Cpe18g00697 1257 ProSiteProfiles Zinc finger CTCHY-type profile. 1072 1135 IPR017921 -
Cpe18g00697 1257 ProSiteProfiles Zinc finger CHY-type profile. 1000 1069 IPR008913 GO:0008270
Cpe18g00697 1257 CDD Hr-like 662 822 - -
Cpe18g00697 1257 CDD Hr-like 312 440 - -
Cpe18g00697 1257 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1129 1180 IPR013083 -
Cpe18g00697 1257 PANTHER CHY ZINC FINGER PROTEIN 30 1249 - -
Cpe18g00697 1257 Gene3D - 1207 1247 - -
Cpe18g00697 1257 Pfam CHY zinc finger 1007 1082 IPR008913 GO:0008270
Cpe18g00697 1257 SMART ring_2 1136 1177 IPR001841 -
Cpe18g00697 1257 CDD RING-H2_Pirh2 1135 1178 - -
Cpe18g00697 1257 Coils Coil 317 337 - -
Cpe18g00697 1257 Pfam Zinc-ribbon 1183 1240 IPR039512 -
Cpe18g00697 1257 Gene3D nmb1532 protein domain like 311 458 - -
Cpe18g00697 1257 Gene3D nmb1532 protein domain like 46 196 - -
Cpe18g00697 1257 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 30 1249 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe18g00697 Cpe-Chr18:6931390 Cpe18g00810 Cpe-Chr18:7551304 2.87E-11 dispersed
Cpe01g01334 Cpe-Chr1:8026755 Cpe18g00697 Cpe-Chr18:6931390 0 wgd
Cpe18g00697 Cpe-Chr18:6931390 Cpe04g01394 Cpe-Chr4:11273317 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe18g00697 K16276 - csv:101215023 2340.46