Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe18g00703 ATGGCGTCCGGCAAGCGATGCCATTACGAGGTCCTCGGCCTCCACATCGACTGCACCGCCGACGAGATTCGATCGGCGTACCGGAAGCTAGCCCTCCAACGCCACCCCGATAAGCTCGTCCAGTCCGGTTTGTCACAATCTGATGCCACCGCTCAGTTTCAAGAGCTTCAGCACGCGTACGAGGTCCTCTCCGATCCTAAAGAACGCGCCTGGTACGACTCTCATCGTTCCCAAATCCTCTTTTCTGATGCCGGATCGGTTAATTCCAACTCTGTTGTTCCGAATCTATTTCCATTCTTCTCCAATACCGTTTATTCTGGCTATTCGGATTCTGGACGAGGGTTCTATAAGATTTATTCCGACATTTTTGACAAAATTTACGGGAATGAGATTAACTTCGCAAAGAAATTAGGATTGCGCTTGGATACGATTCGCAATGCTCCGGTGATGGGGAATTTGGATGCTCCGTACACGCAGGTGACTGCGTTTTATAATTACTGGCTTGGATTTTGCACGGTTATGGATTTTTGCTGGGTTGATCAGTACGATGTCATGGCCGGTCCAAACCGGAAATCGAGGAGGCTAATGGAGGAGGATAACAAGAAGCTGAGGAAGAAGGCAAAGAGGGAGTACAATGAGACAGTAAGAGGTTTGGCCGAGTTTGTGAAGAAGAGGGATAAGAGAGTGACTGATATGGCTATGAAAAGGAACATAGAAATGGAGAAGAAGAAGGAAGAGGAGAGGGAAAGGAAAAAGAAGCTAGAGAGGGAGAAGATGGAGAAGCTTAAGGCATTCGAGGAACCGGATTGGGCCAAAGTTGAGGAAATTGAGGAGGATCCGGAAGATGAATCTGAGGAAGAGAAGAGAGCGAAAGAGCTGTACTGTGTTTTGTGTGGGAAAAAGTTCAAGAGTGAAAAGCAGTGGAAGAATCACGAACAGTCAAAAAAACACAAGGAGAAGGTCGCAGAGTTCAAGGAATCCCTTGACGACGAGGAAGAATCTGAAGAATTTGTTGATGAAGAACAAGATGAAGAAGAAGCCACACTGCTGGATGTTGGGATAGATAAACTAGAGGAGCAGTTCAAGGAAAGTTTTGATATTGAAGCAGAAGAAGCTGAACTTAGTGGGAGTGAATATTATGATGTTCATGAAGTTGATCGATCAGATATCGTTGCTGAGGAACTTGGATCCAATGACGACGACGACGAAACAGATATTCTTGAAGCAATGGCAGCTGGGCTGAGGAATAGGAAAAATGCAGCTTCATTGGATCAGCCTAAAGCTTCCTCAGACAAAGCTCATTTTGAAAGTGAGAACGATGAGCCTAATCCAGCGGAGTTCGAAAATGTTAGGAGGGGAGGAAAGAATCGTCGAGCCAAAAAGAAGGGCAAGGGAAATGATGAAGCTAGGAACGAAACTGAACCCGATTCTCAAAATGACAAAAACAACGGAGACGATACATCATATCAGCAGGATTCCCCTTCCAATTCGTTGGCTAAAGAACAAAGGAATTCAACTCAACCAGCTGATCGGAAAGCAGTCGCACAGAAGGACACAAAGACCAACACTAGGCACGCATCTAAAGGGAAGAAATCCAAGGCAACAGCCAAGGATTCTGGCAATTCATGCGAAACATGTGGGGAGCAGTTTGAATCAAGGAATAAACTGCATAAGCATTTGGGAGCCACAGGGCATGCTGCATTAAAATATCGATGA 1716 45.75 MASGKRCHYEVLGLHIDCTADEIRSAYRKLALQRHPDKLVQSGLSQSDATAQFQELQHAYEVLSDPKERAWYDSHRSQILFSDAGSVNSNSVVPNLFPFFSNTVYSGYSDSGRGFYKIYSDIFDKIYGNEINFAKKLGLRLDTIRNAPVMGNLDAPYTQVTAFYNYWLGFCTVMDFCWVDQYDVMAGPNRKSRRLMEEDNKKLRKKAKREYNETVRGLAEFVKKRDKRVTDMAMKRNIEMEKKKEEERERKKKLEREKMEKLKAFEEPDWAKVEEIEEDPEDESEEEKRAKELYCVLCGKKFKSEKQWKNHEQSKKHKEKVAEFKESLDDEEESEEFVDEEQDEEEATLLDVGIDKLEEQFKESFDIEAEEAELSGSEYYDVHEVDRSDIVAEELGSNDDDDETDILEAMAAGLRNRKNAASLDQPKASSDKAHFESENDEPNPAEFENVRRGGKNRRAKKKGKGNDEARNETEPDSQNDKNNGDDTSYQQDSPSNSLAKEQRNSTQPADRKAVAQKDTKTNTRHASKGKKSKATAKDSGNSCETCGEQFESRNKLHKHLGATGHAALKYR 571
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 6961937 6965540 - Cp4.1LG18g07020.1 Cpe18g00703 485164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe18g00703 571 Pfam Zinc-finger double-stranded RNA-binding 293 318 IPR022755 -
Cpe18g00703 571 ProSiteProfiles Zinc finger C2H2 type domain profile. 541 570 IPR013087 -
Cpe18g00703 571 PANTHER DNAJ PROTEIN JJJ1 HOMOLOG 1 571 IPR044648 -
Cpe18g00703 571 SMART c2h2final6 293 317 IPR013087 -
Cpe18g00703 571 SMART c2h2final6 541 565 IPR013087 -
Cpe18g00703 571 MobiDBLite consensus disorder prediction 328 346 - -
Cpe18g00703 571 ProSitePatterns Nt-dnaJ domain signature. 53 72 IPR018253 -
Cpe18g00703 571 Coils Coil 314 334 - -
Cpe18g00703 571 MobiDBLite consensus disorder prediction 305 327 - -
Cpe18g00703 571 MobiDBLite consensus disorder prediction 429 453 - -
Cpe18g00703 571 Pfam DnaJ domain 8 73 IPR001623 -
Cpe18g00703 571 PRINTS DnaJ domain signature 9 27 IPR001623 -
Cpe18g00703 571 PRINTS DnaJ domain signature 27 42 IPR001623 -
Cpe18g00703 571 PRINTS DnaJ domain signature 48 68 IPR001623 -
Cpe18g00703 571 CDD DnaJ 7 65 IPR001623 -
Cpe18g00703 571 MobiDBLite consensus disorder prediction 482 512 - -
Cpe18g00703 571 Coils Coil 193 213 - -
Cpe18g00703 571 MobiDBLite consensus disorder prediction 305 346 - -
Cpe18g00703 571 MobiDBLite consensus disorder prediction 416 549 - -
Cpe18g00703 571 ProSitePatterns Zinc finger C2H2 type domain signature. 543 565 IPR013087 -
Cpe18g00703 571 ProSiteProfiles dnaJ domain profile. 7 76 IPR001623 -
Cpe18g00703 571 MobiDBLite consensus disorder prediction 461 481 - -
Cpe18g00703 571 Gene3D DnaJ domain 1 90 IPR036869 -
Cpe18g00703 571 Gene3D Classic Zinc Finger 272 340 - -
Cpe18g00703 571 ProSitePatterns Zinc finger C2H2 type domain signature. 295 317 IPR013087 -
Cpe18g00703 571 SUPERFAMILY Chaperone J-domain 4 97 IPR036869 -
Cpe18g00703 571 SUPERFAMILY beta-beta-alpha zinc fingers 282 338 IPR036236 -
Cpe18g00703 571 SMART dnaj_3 6 68 IPR001623 -
Cpe18g00703 571 SMART ZnF_U1_5 290 324 IPR003604 GO:0003676|GO:0008270
Cpe18g00703 571 Coils Coil 235 264 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe14g00326 Cpe-Chr14:1949527 Cpe18g00703 Cpe-Chr18:6961937 2.61E-20 dispersed
Cpe18g00703 Cpe-Chr18:6961937 Cpe01g00042 Cpe-Chr1:289192 4.49E-16 dispersed
Cpe18g00703 Cpe-Chr18:6961937 Cpe04g01465 Cpe-Chr4:11665662 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50904 PF00226 DnaJ 3.60E-21 CL0392 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe18g00703 K09506 - csv:101217729 865.144