Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe18g00704 ATGTATCTATTCTCATTGATTCTTCACCATAAGAAACGCACCTCAGCGTGCATATCAGAAATCTGGGAGATTGGAGTAATGAGCAGTACAGCCTGTTTCACAAGGAAAGAAGAGAGAGCTGATGGAATATCTCTTGGTTCAAAGGAGTACCCAAAAATATTCATTGATGGACCCTACGGTGCTGCTTCTCAAGACCATGTCAAGTACAACCATGTGGTGCTAATTGGCCTGGGTATTGGAGCCACACCCTTCATGAGCGTCCTAAAAGATGTTCTAAACAGGTTAACTGAGACATGTGATGGTCATTTTAATTCATGCGATGGAGACATAGGGATGCTACCTGTTACTGCGAGACGCACGAACATTCAGCCGAAGTTCAACTCAAGCAATTCAAATGCAGCTGCGAAACTCAATACTGAAATCAATGGCCGCCATCTCCGCCGGAAAACTTTGAGCACCTCAAGCTCGCCCTCCGCATTTCGAATGGCGGCTCATTCCTCAACTTCCAGTAATAACCGAGCTTTGAGAACCGCAACTTCTAATCAGTTTTTTGAATGGAGGGAGTTTGTATGGGGAGCTATAGCTGGAGCATTTGGAGAAGGAATAATGCACCCTATTGATACCATCAAGACTCGGATTCAAAGCCAGGCTATTCTATATGGCAGTCAAAATCAAAAGAGCCTGTTGCGGATGGTCCAATCAGTATGGAAAATTGACGGATTAAAGGGCTTTTATAGGGGCATAGCTCCCGGAGTTACTGGTTCACTTGCCACTGGAGCTACATATTTTGGTGTTATTGAATCCAGTAAGAAATGGATTGAAGAAAGACATCCTAACCTTGACGGTCACTGGGTTCATTTCATTGCTGGAGCAGTTGGTGATACACTGGGTTCATTTGTATATGTTCCATGTGAAGTTATGAAGCAGCGAATGCAAGTTCAAGGCACTAGGTCATCTTGGAATTCCCTTCCCATGAAGAATAATATCTCTATGAATCCTGGTAGGCCAATGTATGGCTATTATTCAGGGATGTTCCAGGCTGGTCGTTCAATCTTGAAGGAACAAGGATTAAGAGGATTATATGCGGGATATTGGTCTACACTTGCCAGGGATGTGCCGTTTGCTGGTCTAATGGTCATGTTTTACGAGGCGCTGAAGGATTTCACCGAGTTTGGGAAGCGAAGATGGATGCCTAATTCAGATGTTAATAGCTCCTTGGAAGGACTTGTGTTAGGGGGATTAGCTGGTGGTATGAGTGCTTATCTGACCACTCCCCTGGATGTGATAAAAACAAGAATACAAGTTCAGGGAACAACTTTAAGGTATAACGGCTGGTTCGATGCGGTGAGAACTATCTGGCGGAGCGAGGGAACGAAGGGAATGTTTAGGGGTAGCATACCCAGAATCACATGGTATATTCCAGCTTCCGCTCTAACTTTCATGGCTGTGGAATTTCTGAGAGACCATTTCAATGAAAGATTGGATGTTAAATACAAAAACGAAGCTGCTACTTTATCAGTTGATAGAAGAGGAACATTACGAGAAGCAGCATTACCTGCTCGAGACTGA 1569 44.04 MYLFSLILHHKKRTSACISEIWEIGVMSSTACFTRKEERADGISLGSKEYPKIFIDGPYGAASQDHVKYNHVVLIGLGIGATPFMSVLKDVLNRLTETCDGHFNSCDGDIGMLPVTARRTNIQPKFNSSNSNAAAKLNTEINGRHLRRKTLSTSSSPSAFRMAAHSSTSSNNRALRTATSNQFFEWREFVWGAIAGAFGEGIMHPIDTIKTRIQSQAILYGSQNQKSLLRMVQSVWKIDGLKGFYRGIAPGVTGSLATGATYFGVIESSKKWIEERHPNLDGHWVHFIAGAVGDTLGSFVYVPCEVMKQRMQVQGTRSSWNSLPMKNNISMNPGRPMYGYYSGMFQAGRSILKEQGLRGLYAGYWSTLARDVPFAGLMVMFYEALKDFTEFGKRRWMPNSDVNSSLEGLVLGGLAGGMSAYLTTPLDVIKTRIQVQGTTLRYNGWFDAVRTIWRSEGTKGMFRGSIPRITWYIPASALTFMAVEFLRDHFNERLDVKYKNEAATLSVDRRGTLREAALPARD 522
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 6965984 6972591 - Cp4.1LG18g07050.1 Cpe18g00704 485165

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe18g00704 522 Gene3D Mitochondrial carrier domain 148 330 IPR023395 -
Cpe18g00704 522 PANTHER S-ADENOSYLMETHIONINE MITOCHONDRIAL CARRIER PROTEIN 162 512 - -
Cpe18g00704 522 SUPERFAMILY Mitochondrial carrier 185 486 IPR023395 -
Cpe18g00704 522 Pfam Mitochondrial carrier protein 186 275 IPR018108 -
Cpe18g00704 522 Pfam Mitochondrial carrier protein 283 388 IPR018108 -
Cpe18g00704 522 Pfam Mitochondrial carrier protein 406 492 IPR018108 -
Cpe18g00704 522 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 52 97 IPR039261 -
Cpe18g00704 522 PRINTS Cytochrome B-245 heavy chain signature 74 91 IPR000778 GO:0016020|GO:0016491
Cpe18g00704 522 PRINTS Cytochrome B-245 heavy chain signature 51 64 IPR000778 GO:0016020|GO:0016491
Cpe18g00704 522 Pfam Ferric reductase NAD binding domain 69 98 IPR013121 GO:0016491
Cpe18g00704 522 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN 162 512 - -
Cpe18g00704 522 ProSiteProfiles Solute carrier (Solcar) repeat profile. 403 489 IPR018108 -
Cpe18g00704 522 ProSiteProfiles Solute carrier (Solcar) repeat profile. 183 272 IPR018108 -
Cpe18g00704 522 Gene3D Mitochondrial carrier domain 339 507 IPR023395 -
Cpe18g00704 522 ProSiteProfiles Solute carrier (Solcar) repeat profile. 281 388 IPR018108 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe18g00704 - - - csv:101208060 665.611
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe04g01464 Cpe18g00704 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g02132 Cpe-Chr1:17979988 Cpe18g00704 Cpe-Chr18:6965984 6.51E-07 dispersed
Cpe13g00699 Cpe-Chr13:6511488 Cpe18g00704 Cpe-Chr18:6965984 5.10E-29 dispersed
Cpe18g00704 Cpe-Chr18:6965984 Cpe19g00268 Cpe-Chr19:2232260 8.72E-32 dispersed
Cpe05g00338 Cpe-Chr5:1882941 Cpe18g00704 Cpe-Chr18:6965984 3.98E-07 transposed
Cpe18g00704 Cpe-Chr18:6965984 Cpe04g01464 Cpe-Chr4:11661315 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g653 . . Bda06g00525 . . . . Bma12g00968 . . . . . Car11g00182 . . Cpe04g01464 Bhi02g00689 . . . . . . Cla06g01542 Cam06g1702 Cec06g1764 Cco06g1763 Clacu06g1669 Cmu06g1615 Cre06g2428 . . . . . . . . . Blo15g00333 . . Bpe07g00758 . . . . . Cmo11g00207 . . . . . Cpe18g00704 . . . . . . . . . . . . . . Lsi06g01417 Csa01g00290 Chy02g02445 Cme02g01833
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009832 1 2 1 1 1 1 1 1 1 1 0 1 1 1 1 2 1 0 2 1 1 1 0 1 1 1 1 5 0 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe18g00704 Cpe_Chr18 FPKM 169.105499 179.551147 111.419098 114.993965 222.207062 212.776001 224.942505 130.164597 134.347336 127.30706