Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe18g00719 ATGCAAGACATCCACTCGATCGCCGGAGGAAGTCGGTTGTTCGGTGGCGGGGGTGACCGTCGTCTGAGGCCGCACCTCCACCACCACCAAAACCACCAGGCCTTGAAGTGCCCAAGGTGTGATTCTCTCAATACAAAGTTCTGTTATTACAACAACTATAATCTCTCTCAGCCTCGTCACTTCTGCAAGAGCTGCCGACGTTACTGGACTAAAGGCGGCGTCCTCCGTAACGTTCCTGTCGGAGGCGGTTGCCGGAAAACCAAACGCTCCTCCTCGTCGAAGTCCAAGTCCAGTCCCGATGTAGCGGCGACGTCTCCTCCTCCTCCTCCTCCTCCTCCTCTTCGCGAACGTAAATCCACCTCTCATTCCAGTAGCGAGAGCTCTAGCCTAACCGCTACAACCACCACGGCTGCCGCGGCGGCGACAGAGGCCGTCTCTGCTCCGTCCTCCATTTCAACGTCGGCTCTATTGAGCGTACAGGATAGGAAATTGTTCCCCGCTCCGACTACAAACCCTAATTTCGATGGTGCGGCGACGGACTGCGGGATTTTCTCGGAAATCGGAAACTTCACGAGCTTGATCACATCGACTAACGAGACATTGGCGTTTGGATTCGGCAATATGGGGGATGTGACGCCGTTTGCGATGAATCATCCGTTTCAAAATCAGGCGGCGAATCAATGGCCGTCGCAGAGAATGATGAACGGTAACGATGAGGTGAAGATGCAGGAGATCACAGGCGGAGGAGGAGGGTACATGGATCAGACGGCACAGGTGGATCCATCAACAGGGCTACAGAATAGCAGATCAAGCAACATTGGATTCGGACCGTTGGATTGGCAATCAAACGGAGATCATCAAGCTCTGTTTGATCTCCCCAACGCCGTTGATCAAGCATACTGGAGTCAAAATCAGTGGAGTAGTGATCAAGATCAGCCTAATCTGTACCTTCCGTAA 957 53.4 MQDIHSIAGGSRLFGGGGDRRLRPHLHHHQNHQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGVLRNVPVGGGCRKTKRSSSSKSKSSPDVAATSPPPPPPPPLRERKSTSHSSSESSSLTATTTTAAAAATEAVSAPSSISTSALLSVQDRKLFPAPTTNPNFDGAATDCGIFSEIGNFTSLITSTNETLAFGFGNMGDVTPFAMNHPFQNQAANQWPSQRMMNGNDEVKMQEITGGGGGYMDQTAQVDPSTGLQNSRSSNIGFGPLDWQSNGDHQALFDLPNAVDQAYWSQNQWSSDQDQPNLYLP 318
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 7070461 7071417 - Cp4.1LG18g07170.1 Cpe18g00719 485180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe18g00719 318 ProSiteProfiles Zinc finger Dof-type profile. 35 89 IPR003851 GO:0003677|GO:0006355
Cpe18g00719 318 MobiDBLite consensus disorder prediction 245 278 - -
Cpe18g00719 318 MobiDBLite consensus disorder prediction 79 136 - -
Cpe18g00719 318 ProSitePatterns Zinc finger Dof-type signature. 37 73 IPR003851 GO:0003677|GO:0006355
Cpe18g00719 318 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 16 305 IPR045174 GO:0003700|GO:0006355
Cpe18g00719 318 PANTHER DOF ZINC FINGER PROTEIN 4 16 305 - -
Cpe18g00719 318 MobiDBLite consensus disorder prediction 1 21 - -
Cpe18g00719 318 MobiDBLite consensus disorder prediction 102 116 - -
Cpe18g00719 318 Pfam Dof domain, zinc finger 33 89 IPR003851 GO:0003677|GO:0006355
Cpe18g00719 318 MobiDBLite consensus disorder prediction 256 278 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe04g01443 Cpe18g00719 CCT
Cpe18g00719 Cpe20g00241 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe18g00719 Cpe-Chr18:7070461 Cpe10g00531 Cpe-Chr10:3110980 1.55E-33 dispersed
Cpe18g00719 Cpe-Chr18:7070461 Cpe04g01443 Cpe-Chr4:11530876 2.32E-140 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50907 PF02701 zf-Dof 4.20E-33 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe18g00719 - - bhj:120071666 469.159