Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe18g00729 CACCACGAGCCAGTTTGTTTGTTGAACAGTTGGCGCGACCGGCAGACTTATCTTCGTAGCCGCCAACCGCAGTGTTTTTGCTTCTGCTGGTGTAGCGTCGTACATTCTGAAGAGTCAACCATGCCGACCGTAAGCGTCGGAAGAGATCGCCTATTTGCTGCCCTCGGAAGAACTTACTCTCAGGAAGAGTTTGAAGAGCTGTGCTTTAGGTTTGGGATTGAGCTTGATGACGTTACGACAGAGAAGGCGATCATTAGGAAAGAGAAGCATTTGGAAGAAGAAGCGGATGAAGATGAAGAAGTCATCTACAAGATCGAGGTCCCCGCTAACAGATACGATTTGCTCTGTCTTGAAGGGCTTGCTCAAGCACTGCGCATTTTTAATAAGCAAGAAGAGACACCCAGATATAAATTATCCAATATCAGCAAGGAATCTATGCACAAAATGCATGTAAACCCGGAGACTTCCTTGGTTCGCCCTTATGTGGTTTGTGCTGTTTTGAGAGACATAACTTTTGATGAAGCAAGTTATAATAGCTTTATTGATCTGCAAGACAAACTTCATCAGAATATATGTCGACGGAGAACTCTTGTTGCCATCGGAACTCATGACCTGGATACACTTGAAGGCCCTTTCACCTATGAGGCTTTGCCACCATCAGCCATAAACTTTGTGCCACTAAAACAGACGAAGAGTTTCAGAGCTGACGAGCTAATGGAGTACTATAAATCAGATTTGAAGCTGAAGAAGTTCCTGCACATAATAGAAAAATCACCTGTATTTCCCGTTTTGTTTGATCGCAACAGAACTGTTTTGTCTTTACCACCAATTATCAATGGTGCACATTCGGCTATTACTTTGAAGACAAAGAATGTGTTTATTGAATGCACTGCAACTGATCTGACAAAGGCAAATATTGTCTTGAATACTATGGTAACTATATTTTCAGCACTGTGCAAAAAGAAGTTTGAAATTGAACCAGTTGAAGTGATATATTCAGATGGGAAGTCGAATATTTATCCAGAGTTATCTCTCTACAATATGGAAGTTTCTCTGTCTTATATCACTAACTGCATTGGAGTCTCATTGGAGGCAGAAGAGGTTACCAATTTGTTAAATAGGATGCAATTGCACGCTGAGCAGTCGGTATCTGGTGACAAGTCTAGTATAACTATATCTGTGCCCCCAACAAGGAGTGATGTGCTTCACCCATGTGATGTCATGGAGGATGTTGCTATAGCTTATGGATTCAATAACATCCCAAAGAGTAAACCAGCATCTTTGCAGCCTCTACCATTAAATGAGTTCAGTGACCTTATCAGAGGAGAGATTGCAATGAGTGGGTTCACGGAGGTACTTACGTGGATCCTATGTTCTTATAAAGAGAACTTTGCCATGTTAAAGCGTGAAGATGATAAATCTACTGCTGTTATCATTGGAAATCCCCGTTCAACAGATTTTGAGGTTGTACGCACCAGTCTTATGCCTGGTCTTTTGAAAACTGTTGGACATAATAAGGATCATCCAAAGCCCATAAAGATATTTGAAGTTGGTGATGTATCATTACTGGATGATGCAAAAGATGTTGGTGCAAGAAATCATCGTCATCTTGCTGCTCTATATTGCAGTGCCAATTCTGGATTTGAGTTGATTCATGGTTTGGTCGACAGAATAATGGAAGTCATAGGAGCTTCTTTTGTTACAGTTGGTGATGAAACTGGGTATTACATAAAGTGTTCAGATAATCCGGAGTTTCTTACTGGTAGACAAGCCCACATCATTTATAAAGGAAGGAAAATTGGCACGTTTGGCATTGTTCATCCTGAGGTTTTGAATAACTTTGACATTCCTGATCCATGTTCCTTTGTTGAACTTAACATCGAGAGCTTTTTATAG 1896 40.88 HHEPVCLLNSWRDRQTYLRSRQPQCFCFCWCSVVHSEESTMPTVSVGRDRLFAALGRTYSQEEFEELCFRFGIELDDVTTEKAIIRKEKHLEEEADEDEEVIYKIEVPANRYDLLCLEGLAQALRIFNKQEETPRYKLSNISKESMHKMHVNPETSLVRPYVVCAVLRDITFDEASYNSFIDLQDKLHQNICRRRTLVAIGTHDLDTLEGPFTYEALPPSAINFVPLKQTKSFRADELMEYYKSDLKLKKFLHIIEKSPVFPVLFDRNRTVLSLPPIINGAHSAITLKTKNVFIECTATDLTKANIVLNTMVTIFSALCKKKFEIEPVEVIYSDGKSNIYPELSLYNMEVSLSYITNCIGVSLEAEEVTNLLNRMQLHAEQSVSGDKSSITISVPPTRSDVLHPCDVMEDVAIAYGFNNIPKSKPASLQPLPLNEFSDLIRGEIAMSGFTEVLTWILCSYKENFAMLKREDDKSTAVIIGNPRSTDFEVVRTSLMPGLLKTVGHNKDHPKPIKIFEVGDVSLLDDAKDVGARNHRHLAALYCSANSGFELIHGLVDRIMEVIGASFVTVGDETGYYIKCSDNPEFLTGRQAHIIYKGRKIGTFGIVHPEVLNNFDIPDPCSFVELNIESFL 631
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 7133789 7142442 + Cp4.1LG18g07270.1 Cpe18g00729 485190

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe18g00729 631 SUPERFAMILY Putative DNA-binding domain 347 421 IPR009061 -
Cpe18g00729 631 SMART B3_4_2 158 320 IPR005146 GO:0003723|GO:0004826
Cpe18g00729 631 Pfam B3/4 domain 159 319 IPR005146 GO:0003723|GO:0004826
Cpe18g00729 631 Gene3D - 139 344 IPR020825 -
Cpe18g00729 631 Gene3D Bira Bifunctional Protein; Domain 2 431 631 IPR045864 -
Cpe18g00729 631 Pfam Phe-tRNA synthetase beta subunit B1 domain 41 129 IPR040659 -
Cpe18g00729 631 Gene3D - 41 129 - -
Cpe18g00729 631 Pfam Phenylalanyl tRNA synthetase beta chain CLM domain 420 627 IPR041616 -
Cpe18g00729 631 Gene3D - 346 420 - -
Cpe18g00729 631 SUPERFAMILY Putative DNA-binding domain 45 133 IPR009061 -
Cpe18g00729 631 TIGRFAM pheT_arch: phenylalanine--tRNA ligase, beta subunit 41 631 IPR004531 GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432
Cpe18g00729 631 SUPERFAMILY Class II aaRS and biotin synthetases 414 630 IPR045864 -
Cpe18g00729 631 Pfam tRNA synthetase B5 domain 348 417 IPR005147 GO:0000287|GO:0003723|GO:0005524|GO:0006432
Cpe18g00729 631 CDD PheRS_beta_core 432 630 IPR041616 -
Cpe18g00729 631 ProSiteProfiles B5 domain profile. 343 422 IPR005147 GO:0000287|GO:0003723|GO:0005524|GO:0006432
Cpe18g00729 631 PANTHER PHENYLALANYL-TRNA SYNTHETASE BETA CHAIN AND LEUCINE-RICH REPEAT-CONTAINING PROTEIN 47 41 631 IPR045060 GO:0004826|GO:0006432
Cpe18g00729 631 PANTHER PHENYLALANINE--TRNA LIGASE BETA SUBUNIT 41 631 - -
Cpe18g00729 631 SMART B5_2 345 417 IPR005147 GO:0000287|GO:0003723|GO:0005524|GO:0006432
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe18g00729 K01890 FARSB, pheT; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] - csv:101210257 1079.7
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00312 Cpe-Chr4:3907151 Cpe18g00729 Cpe-Chr18:7133789 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g401 . . Bda06g00500 . . . . Bma12g00949 . . Cma10g00267 . Car10g00251 . . . . Bhi02g00039 . . . . . . Cla06g01510 Cam06g1665 Cec06g1726 Cco06g1722 Clacu06g1631 Cmu06g1580 Cre06g2390 . . . Cone19ag0020 . . . . . Blo15g00353 . . . . . . . Cmo10g00286 . . . . . . Cpe18g00729 . . . . . . . . . . . . . . Lsi06g01373 Csa01g00315 Chy02g02425 Cme02g01791
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005974 1 2 1 1 0 1 2 1 1 1 1 1 2 2 1 2 1 1 2 1 1 1 1 2 2 2 1 1 2 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe18g00729 Cpe_Chr18 FPKM 8.072493 9.961994 14.190236 14.103848 6.519314 7.249955 7.173481 8.830304 8.799258 9.557066