Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe18g00744 ATGACTTGGAGGAGAGTGTTGAAGTCTGTGCAGGCACTTTTGGCCCACGGTTTACTCTTCTGTTTCACGCTGTTGCTCGTTCTCAAGCTCGATCATTTCGTCTCTTACAGTTGGTGGGTTATATTTTTTCCACTTTGGGTGTTTCATGTGGTTGTTGCTCGAGGAAGGTTCTCATTACCTGCCCCATCTCTTCCTCATAATCGTCATTGGGCACCGTGCCATGCTGTTGTTGCGACACCTTTGCTTATAGCATTTGAGTTACTTCTTTGCATATACCTCGAGAGCCTATCTGTATTCGTCAGGGTATTGTTCTGTATGCTTATTGAGGCAATTCCATTTCTGCCAGTTTATGGTTTTGCTGCTGTGAACTTGAAGATTGTCTTTCTACCGTTGCTGGCATTTGAAATCATTATCTTAATAGATAATTTCAGAATGTGTAGGTCACTGATGCCTGGTGACGATGAAAGCATGAGTGACGAGGCAATATGGGAGACGCTGCCTCACTTTTGGGTTGCCATTTCAATGGTCTTCTTTGTGGCTGCTACAATATTTACTCTATTGAAGCTATGTGGGAATGTTGGTGCTCTTGGCTGGTGGGACTTGTTTATAAATTTTGGCATTGCCGAGTGCTTTGCCTTCCTTGTATGTACAAAGTGGTCTAATCCAGCGATTCATAGAAATATTCAAACAAGAGAAAGTTGTTCATCATCAGCAGTAGTTAGATATCTAGACTGGAACAGTGGTCTAATAGCTTATTCAGAGCAGGATCAGCATCAAGACAGAATGTGTGGCCTTCAAGACATTGGAGGTCATATCATGAAAATTCCCATAATTGTTTTTCAAATCCTACTCTGCATGTATTTGGAGGGAACGCCTGCGAGTGCAAAAGACCTGCCAATTCCTGTCCTTTTCTCGCCCCTTCTATTATTGCAAGGCGCCGCCGTTATTTATGCTATATCTAGGCTGTTAGAGAAAGCTGTACTTCTCTTAAGAGGCGGATCTAGCACAGCATTGTATTTCAGTTTTTCTACTAGGGCTCATGCCTGTTTGGAGTTCTTTCATCATGGTTCAAGGCTATTGGGATGGTGGTCAATTGATGAAGGCAGTCGAGAGGAGCAGGCACGATTGTACCATGAGGGTGCCTCTGGGTACAACACTTTTAGTGGATATCCTCCCGAGATTGTGAAGAAGATGCCCAAGAAAGATCTTGCTGAGGAGGTCTGGCGCCTTCAAGCTGCACTTGGGGAGCAGACAGAAATCACGAAATACAGCCAGCAGGAATATGAAAGACTTCAAAATGAAAAGGTGTTATGTCGGGTTTGTTTCGAGGGAGAAATTAGCGTGGTTCTTCTTCCGTGTAGGCATCGCATACTATGCAGTTCCTGCTCTGAGAAGTGTAAAAAGTGCCCAATATGTCGTGTTTCTATCGAAGAACGGTTACCGGTATACGATGTATAG 1458 43.83 MTWRRVLKSVQALLAHGLLFCFTLLLVLKLDHFVSYSWWVIFFPLWVFHVVVARGRFSLPAPSLPHNRHWAPCHAVVATPLLIAFELLLCIYLESLSVFVRVLFCMLIEAIPFLPVYGFAAVNLKIVFLPLLAFEIIILIDNFRMCRSLMPGDDESMSDEAIWETLPHFWVAISMVFFVAATIFTLLKLCGNVGALGWWDLFINFGIAECFAFLVCTKWSNPAIHRNIQTRESCSSSAVVRYLDWNSGLIAYSEQDQHQDRMCGLQDIGGHIMKIPIIVFQILLCMYLEGTPASAKDLPIPVLFSPLLLLQGAAVIYAISRLLEKAVLLLRGGSSTALYFSFSTRAHACLEFFHHGSRLLGWWSIDEGSREEQARLYHEGASGYNTFSGYPPEIVKKMPKKDLAEEVWRLQAALGEQTEITKYSQQEYERLQNEKVLCRVCFEGEISVVLLPCRHRILCSSCSEKCKKCPICRVSIEERLPVYDV 485
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 7220515 7228944 + Cp4.1LG18g07470.1 Cpe18g00744 485205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe18g00744 485 SMART ring_2 438 472 IPR001841 -
Cpe18g00744 485 Pfam Zinc finger, C3HC4 type (RING finger) 435 478 - -
Cpe18g00744 485 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 414 483 IPR013083 -
Cpe18g00744 485 ProSiteProfiles Zinc finger RING-type profile. 438 473 IPR001841 -
Cpe18g00744 485 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 1 485 - -
Cpe18g00744 485 SUPERFAMILY RING/U-box 429 480 - -
Cpe18g00744 485 Pfam Transmembrane Fragile-X-F protein 28 122 IPR019396 -
Cpe18g00744 485 Pfam Transmembrane Fragile-X-F protein 106 310 IPR019396 -
Cpe18g00744 485 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 485 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe04g01416 Cpe18g00744 CCT
Cpe04g01416 Cpe18g00744 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01760 Cpe-Chr1:13197792 Cpe18g00744 Cpe-Chr18:7220515 5.81E-13 dispersed
Cpe01g01761 Cpe-Chr1:13201864 Cpe18g00744 Cpe-Chr18:7220515 0 dispersed
Cpe03g01402 Cpe-Chr3:11305170 Cpe18g00744 Cpe-Chr18:7220515 1.03E-06 dispersed
Cpe14g00951 Cpe-Chr14:8023025 Cpe18g00744 Cpe-Chr18:7220515 1.94E-09 dispersed
Cpe18g00744 Cpe-Chr18:7220515 Cpe04g00106 Cpe-Chr4:952506 1.40E-09 dispersed
Cpe17g00715 Cpe-Chr17:5682487 Cpe18g00744 Cpe-Chr18:7220515 5.50E-06 transposed
Cpe18g00744 Cpe-Chr18:7220515 Cpe04g01416 Cpe-Chr4:11377967 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe18g00744 - - csv:101215825 897.116