Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe18g00755 ATGATCGAAGAAAGCCGGGATGAACAGTCTCTCATGGACGTTCGCGCCAAAACAGGGAAGAATAGGCGCGAACGCTCGGTGAACACGGCACACTGCGGTCACAACGATGGCCGGAAGAAGAGGCGGAGATTTGCATTCAGTTCAGAAACCACAATTCCAACATCCAGCGAGCCTCAGAAGCTTCCTTCATCGAAAAGGTCCAAGCCAGTTGGTTCTCCCTCTCGAACTTCACGAAAGTACGAGAAGAGGAGGTCGGGTGAGTCGGATGGTCATCGTCTATGGGTGTACTCTACTCGTGATTGCTCAAGATTTATAGGCCCTGAAATCCAGAAACCTTCTCACCATCAAGATGATAAGATTATGGTTGCTTCATATAATATACTAGGAGTGGAAAATGCATTGAAGCATCCAGATTTGTATCATAGAGTGCCTTCCAAATTCATGGATTGGAGTTTCCGGAAAGAGCTTATATGCAATGCAATTAAATTTTACAATGCAGGCATCTTATGCTTGCAGGAGGTTGACCGTTTTAATGATTTGGATGAACTTTTCCAAAATTATGGCTACAAAGGTGTTTACAAGGCTAGAACTGGTGAAGCAAATGACGGGTGTGCTTTATTTTGGATCGAAAAACTGTTTACCCTTTTGCATCAAGAAAGTATAGAGTTCCAGAGTTTTGGGCTACGTAACAATGTTGCTCAACTATGTGTTTTTAAGATGAATAAATCTAAATCAAGGTCCAAAACAAGTCGAAGCTTTGTGATTGGGAACATACACGTTCTTTTCAACCCAAATCGAGGAGACATTAAGCTTGGGCAGGTCAGACTGTTTCTTGAAAAAGCTCATAGCCTCTCACAAAGATGGGGAAACATACCTGTTATTATGGCCGGGGATCTGAATAGCATACCAAAGAGTGCAATATATCAGTTTTTGGCTTCATCAGAGCTGGATATACAACTGCATGACCGCAGAAAGATTTCAGGGCAGCTTGATTTTTCATCATCACGCGGAGCCTTCAGATTTTGTAGTGAGGGTACAAAATGGTCCAATGTTTCAGCCTCAAGGTCCTTCAGATGGAGTGGTGAGGAAATAAGGATCGCATCTGGTATCGAGAACGTTACCTGTCTTCAGCACCATTTAAAGCTTTCCAGTGCATACTATGGGGTTCCTGGAAGTTGTAAAACAAGAGATGCTAACGGAGAACCTTTAGTAACTTCATTCCACTCCAACTTTATGGGAACTGTCGATTATATATGGCACTCAGAAAAACTTGCCCCTGTTAGGGTTCTGGAAACATTGCCTATTGATGCATTAAAAAGGACTGGAGGACTTCCTAATGAGAAATGGGGCAGCGATCATCTTGCTCTTGTTTGCGAACTGGCTTTTGATGACGAAGACAATGTGACTTGA 1410 42.98 MIEESRDEQSLMDVRAKTGKNRRERSVNTAHCGHNDGRKKRRRFAFSSETTIPTSSEPQKLPSSKRSKPVGSPSRTSRKYEKRRSGESDGHRLWVYSTRDCSRFIGPEIQKPSHHQDDKIMVASYNILGVENALKHPDLYHRVPSKFMDWSFRKELICNAIKFYNAGILCLQEVDRFNDLDELFQNYGYKGVYKARTGEANDGCALFWIEKLFTLLHQESIEFQSFGLRNNVAQLCVFKMNKSKSRSKTSRSFVIGNIHVLFNPNRGDIKLGQVRLFLEKAHSLSQRWGNIPVIMAGDLNSIPKSAIYQFLASSELDIQLHDRRKISGQLDFSSSRGAFRFCSEGTKWSNVSASRSFRWSGEEIRIASGIENVTCLQHHLKLSSAYYGVPGSCKTRDANGEPLVTSFHSNFMGTVDYIWHSEKLAPVRVLETLPIDALKRTGGLPNEKWGSDHLALVCELAFDDEDNVT 469
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 7268081 7275245 - Cp4.1LG18g07550.1 Cpe18g00755 485216

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe18g00755 469 Gene3D Endonuclease/exonuclease/phosphatase 92 468 IPR036691 -
Cpe18g00755 469 SUPERFAMILY DNase I-like 118 461 IPR036691 -
Cpe18g00755 469 Pfam Endonuclease/Exonuclease/phosphatase family 123 453 IPR005135 GO:0003824
Cpe18g00755 469 MobiDBLite consensus disorder prediction 1 86 - -
Cpe18g00755 469 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 63 462 - -
Cpe18g00755 469 MobiDBLite consensus disorder prediction 47 74 - -
Cpe18g00755 469 MobiDBLite consensus disorder prediction 1 34 - -
Cpe18g00755 469 PANTHER PROTEIN ANGEL 63 462 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe18g00755 - - - bhj:120088620 780.785
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00464 Cpe-Chr2:2627065 Cpe18g00755 Cpe-Chr18:7268081 7.52E-06 dispersed
Cpe14g00010 Cpe-Chr14:66539 Cpe18g00755 Cpe-Chr18:7268081 1.27E-08 dispersed
Cpe18g00749 Cpe-Chr18:7241662 Cpe18g00755 Cpe-Chr18:7268081 1.07E-103 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g331 . . . . Bpe12g00689 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cpe18g00755 . . . . . . . . . . . . . . . Csa01g00379 . Cme02g01745
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006864 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 5 2 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe18g00755 Cpe_Chr18 FPKM 20.645947 27.877844 15.999785 17.179365 40.23381 55.710178 36.137127 32.600479 29.025846 27.75378