Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe18g00757 ATGAGAACTCGCAGCCGTCAACAGACACTTCCCCAATGGGTAACAAAACCAGAGAGTCACCAAAACTGGAAAACCATTAGCGCCCATCAATACAAAAACAAAACCCACCCTCGTTTCCTTCCCCATTACGACACAACTTTCTTTCTCTTCTTCGCAATCCAATCATCGGCCATGCGTATGAGCTGCAACGGATGCCGAGTTCTTCGCAAAGGCTGCAGTGAGAGCTGCTCCATCAGACCCTGTCTTCAATGGATCAAAACCCCTCAATCCCAAGCCAACGCTACTTTCTTCCTCGCCAAATTCTACGGCCGAGCTGGCCTCCTTAACCTCATCAATGCCGGCCCCGACCATCTCCGCCCTGCTATTTTTAAATCTTTGCTGTTCGAGGCGTGTGGCCGGATTGTCAATCCGATCTTCGGGTCGGCCGGATTGTTGTGGTCCGGGAGTTGGCAGCTGTGTCAGGACGCCGTGGAAGCCGTTCTAAATGGCGCACCGATTCCGCCGGTTTCTTACGAGATGGCGACGTCCCACATGGGCCCACCTTTGAAAGGCTGCGACATCCGCCATGTGTCCAAACAGCAAGACTCCGGTCTCAGTGAGATAAAGAAGCGGCGGAGGTTCAAGCGCAAGCCGAAGCCGAAGGAGGAACCGGTTATGTTACCCGAGTTCGTAGTGGATGGACCGACCCGGATTTCATCGGAGCCCCGGTGTTTCAAGTTTGAGTTGGACAATCTAGCGGGCCATGTGTCGCCGGAGAAGGTCTGCGGCAGCGAACATACCGAGTGCTTGTCGGTGGAGACCGCGGAGGCTTCTTCGGTGGGCCAGGGTGGTGGCGTGGAGTTGGAACTTACCTTGGGGTTTGGGCACGGTCGGATGCTGACGTGTAAAGAGAGATAG 897 54.85 MRTRSRQQTLPQWVTKPESHQNWKTISAHQYKNKTHPRFLPHYDTTFFLFFAIQSSAMRMSCNGCRVLRKGCSESCSIRPCLQWIKTPQSQANATFFLAKFYGRAGLLNLINAGPDHLRPAIFKSLLFEACGRIVNPIFGSAGLLWSGSWQLCQDAVEAVLNGAPIPPVSYEMATSHMGPPLKGCDIRHVSKQQDSGLSEIKKRRRFKRKPKPKEEPVMLPEFVVDGPTRISSEPRCFKFELDNLAGHVSPEKVCGSEHTECLSVETAEASSVGQGGGVELELTLGFGHGRMLTCKER 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 7279054 7283178 - Cp4.1LG18g07500.1 Cpe18g00757 485218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe18g00757 298 Pfam Lateral organ boundaries (LOB) domain 61 159 IPR004883 -
Cpe18g00757 298 PANTHER LOB DOMAIN-CONTAINING PROTEIN 40 58 288 - -
Cpe18g00757 298 ProSiteProfiles LOB domain profile. 60 166 IPR004883 -
Cpe18g00757 298 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 58 288 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe04g01407 Cpe18g00757 CCT
Cpe04g01407 Cpe18g00757 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00193 Cpe-Chr6:1035430 Cpe18g00757 Cpe-Chr18:7279054 1.79E-45 dispersed
Cpe18g00757 Cpe-Chr18:7279054 Cpe19g00663 Cpe-Chr19:5304244 1.69E-50 dispersed
Cpe18g00757 Cpe-Chr18:7279054 Cpe04g01407 Cpe-Chr4:11336629 8.07E-137 wgd
Cpe18g00757 Cpe-Chr18:7279054 Cpe09g00304 Cpe-Chr9:1789293 1.58E-62 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50912 PF03195 LOB 1.20E-21 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe18g00757 - - csv:101219232 407.142