Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe18g00757 | ATGAGAACTCGCAGCCGTCAACAGACACTTCCCCAATGGGTAACAAAACCAGAGAGTCACCAAAACTGGAAAACCATTAGCGCCCATCAATACAAAAACAAAACCCACCCTCGTTTCCTTCCCCATTACGACACAACTTTCTTTCTCTTCTTCGCAATCCAATCATCGGCCATGCGTATGAGCTGCAACGGATGCCGAGTTCTTCGCAAAGGCTGCAGTGAGAGCTGCTCCATCAGACCCTGTCTTCAATGGATCAAAACCCCTCAATCCCAAGCCAACGCTACTTTCTTCCTCGCCAAATTCTACGGCCGAGCTGGCCTCCTTAACCTCATCAATGCCGGCCCCGACCATCTCCGCCCTGCTATTTTTAAATCTTTGCTGTTCGAGGCGTGTGGCCGGATTGTCAATCCGATCTTCGGGTCGGCCGGATTGTTGTGGTCCGGGAGTTGGCAGCTGTGTCAGGACGCCGTGGAAGCCGTTCTAAATGGCGCACCGATTCCGCCGGTTTCTTACGAGATGGCGACGTCCCACATGGGCCCACCTTTGAAAGGCTGCGACATCCGCCATGTGTCCAAACAGCAAGACTCCGGTCTCAGTGAGATAAAGAAGCGGCGGAGGTTCAAGCGCAAGCCGAAGCCGAAGGAGGAACCGGTTATGTTACCCGAGTTCGTAGTGGATGGACCGACCCGGATTTCATCGGAGCCCCGGTGTTTCAAGTTTGAGTTGGACAATCTAGCGGGCCATGTGTCGCCGGAGAAGGTCTGCGGCAGCGAACATACCGAGTGCTTGTCGGTGGAGACCGCGGAGGCTTCTTCGGTGGGCCAGGGTGGTGGCGTGGAGTTGGAACTTACCTTGGGGTTTGGGCACGGTCGGATGCTGACGTGTAAAGAGAGATAG | 897 | 54.85 | MRTRSRQQTLPQWVTKPESHQNWKTISAHQYKNKTHPRFLPHYDTTFFLFFAIQSSAMRMSCNGCRVLRKGCSESCSIRPCLQWIKTPQSQANATFFLAKFYGRAGLLNLINAGPDHLRPAIFKSLLFEACGRIVNPIFGSAGLLWSGSWQLCQDAVEAVLNGAPIPPVSYEMATSHMGPPLKGCDIRHVSKQQDSGLSEIKKRRRFKRKPKPKEEPVMLPEFVVDGPTRISSEPRCFKFELDNLAGHVSPEKVCGSEHTECLSVETAEASSVGQGGGVELELTLGFGHGRMLTCKER | 298 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
18 | 7279054 | 7283178 | - | Cp4.1LG18g07500.1 | Cpe18g00757 | 485218 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe18g00757 | 298 | Pfam | Lateral organ boundaries (LOB) domain | 61 | 159 | IPR004883 | - | |
Cpe18g00757 | 298 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 40 | 58 | 288 | - | - | |
Cpe18g00757 | 298 | ProSiteProfiles | LOB domain profile. | 60 | 166 | IPR004883 | - | |
Cpe18g00757 | 298 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 38 | 58 | 288 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cpe04g01407 | Cpe18g00757 | CCT | |
Cpe04g01407 | Cpe18g00757 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe06g00193 | Cpe-Chr6:1035430 | Cpe18g00757 | Cpe-Chr18:7279054 | 1.79E-45 | dispersed | |
Cpe18g00757 | Cpe-Chr18:7279054 | Cpe19g00663 | Cpe-Chr19:5304244 | 1.69E-50 | dispersed | |
Cpe18g00757 | Cpe-Chr18:7279054 | Cpe04g01407 | Cpe-Chr4:11336629 | 8.07E-137 | wgd | |
Cpe18g00757 | Cpe-Chr18:7279054 | Cpe09g00304 | Cpe-Chr9:1789293 | 1.58E-62 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
50912 | PF03195 | LOB | 1.20E-21 | No_clan | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe18g00757 | - | - | csv:101219232 | 407.142 |