Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe18g00760 ATGGCTTTTGCGACTACCAAACTATCGGAACTGCCATTGAAGAACTCACTTCCACTCTTCTCCCACTCGCGTACTCTTCTTTCAACCCCCAATTTGTCTTTGCAGATTCTAAAGACCTTTTCTTCTCTCAGAACCCCCACTGAGCACAGCGGCAAGAGAATCCCTAAAACCTCCCACAATTCTGGACCCTCTTCTTCTTGGATCTCCAAATGGCCTCCTGGGAGCTCTCGTAACGATCGTAAAGTCGAGAAGAATTTGGCCGAAACGACCCGAGATGATCGAACTGATCGAGCGGAGAATCAGACGCAATTCTTCGATAAGAACGGAGGGGAGAGTGCAGTTGATCGAATTGTGCTTCGCTTACGAAATTTAGGGTTAGAGGAGGCTAACGAATTGGATTCTCTCGAGCCAATGCCGGTGACGGGGGAGGAAAGATTTGGGGATTTACTTCAACGTGAATGGATTCGACCGGATACCATATTGGATGAAATGGTTCTACCATGGGAGAGAGAGGAGGAAAGGGCGGAAGAGGAGGGCGGTGGAAGAGGGTTGAAAAGGAGAAAGATGAAACCTCCGACATTAGCTGAATTGACAATCGAAGATGAGGAGCTGAGGCGACTGAGGGGAATGGGGATGTTCATTAGAGAACGGATTAACATACCGAAAGCGGGGATTACACAGGCAGTGCTAGAGAAGATTCATGGGAAATGGAGGAAGGAGGAACTTGTAAGGCTTAAGTTTCACGAGGAGCTTGCACACGACATGAAGACAGCGCACCAAATTGTAGAGCGAAGAACTGGAGGATTGGTTCTGTGGAGGTCTGGAAGTGTTATGGTAGTTTATCGTGGTAGTAACTATGAAGCGCCATCGAAAACTAAGCCCCTTGCAAGGGAGAGGGAAGGGATATCCATCCCAGATGCTTCTTCTGCTGCCATTTCAACAATGAGTGGCAGTGTTGCGGCTTCAGCTCCAGATACGGCCAAGATGTCAGAGGAAGAGGTTGAATACAACCAACTCCTAGATGGTTTAGGTCCTCGTTTTGTTGAATGGTGGGGCACAGGAGTGCTTCCTATTGATGCTGATCAGCTTCCTCCGAGTATTCCCGGTTACAAAACTCCTCTCAGGCTTCTCCCAACCGGAATGCGGTCGGGACTTACCAATGCAGAGATGACTGAGATGAGGAAGCTTGCGAAATCCTTGCCTTGTCATTTTGCTCTTGGGAGAAACAGGAACCATCAGGGCTTGGCTGTTGCTATACTTAAACTTTGGGAGAAAAGCCTAGTGGCTAAAATTGCTGTTAAAAGAGGTATACAGAATACCAATAATAAACTCATGGCTGAGGAGATAAGGAATTTAACAGGAGGTATGTTACTATTGAGAAACAAGTATTTTATCGTCGTATATCGTGGGAAGGATTTTCTCCCAACAAGTGTAGCTGCAGCATTGGTGGAACGGCAGGAATTAACAAAACAGATTCAAGACTTGGAAGAGAAAGCTCGAAGTAAAGTCGTCGAGGCTACTTCATCAAGCGATGATGGACAGGCACCTGCAGGTACCTTGGCTGAATTTTATGAGGCTCAGTCCAGGTGGGGAAGGGAAATATCTGCTGAAGAGCGTGAAAAAATGATCGAAGAAAGCTCGAGAGCAAAAACTGCAAAACTTGTCAGACGAATTGAACATAAGCTAGGCGTTGCCCAAGCTAAGAAACTTAGAGCAGAAAGATTGCTATCTAGAATTGAAGCGTCCATGGTTCTTTCTGGCCCTGATGATGACCAGGAAACAATAACGGATGAGGAACGGGTCATGTTTCGAAAAGTTGGGTTACGAATGACAGCATATTTACCCATAGGCATTCGTGGTGTCTTCGATGGTGTGGTTGAAAACATGCATTTACACTGGAAGCATAGGGAGCTGGTTAAGTTAATTAGCAAGCAAAAGACACTTGCTTTTGTGGAAGAAACAGCAAGATTGTTAGAGTATGAGAGTGGTGGGATACTAGTTTCGATTGATCGAGTTCCAAAAGGATATACCCTTATTTACTATCGAGGAAAGAATTATCGTCGACCCATTGCCTTGAGGCCAAGAAACTTGCTTACGAAGGCAAAAGCATTGAAGCGTTCGGTTGCCATGCAGCGTCATGAGGCTCTCAGTCAGCATATATCTGAACTCGAGAAGAACATAGAGGAAATGAAGAAAGAAATTGGTGTCACTGATGATTCAGATGATGAGAATAACTGGTCGTCTCAGGATGGACCTGTCTCAGAATCTTTCCAAGACGAGGAAGCATCTTTGTCTGCAATTTCAGACGATGACAGTGATGAAGATAGCAATGATGAAGACAGTGAGTTCGAAGAAGATAAAGATTTTGATTTTTCCGACTCCGGAAAGCACCGATGA 2397 45.52 MAFATTKLSELPLKNSLPLFSHSRTLLSTPNLSLQILKTFSSLRTPTEHSGKRIPKTSHNSGPSSSWISKWPPGSSRNDRKVEKNLAETTRDDRTDRAENQTQFFDKNGGESAVDRIVLRLRNLGLEEANELDSLEPMPVTGEERFGDLLQREWIRPDTILDEMVLPWEREEERAEEEGGGRGLKRRKMKPPTLAELTIEDEELRRLRGMGMFIRERINIPKAGITQAVLEKIHGKWRKEELVRLKFHEELAHDMKTAHQIVERRTGGLVLWRSGSVMVVYRGSNYEAPSKTKPLAREREGISIPDASSAAISTMSGSVAASAPDTAKMSEEEVEYNQLLDGLGPRFVEWWGTGVLPIDADQLPPSIPGYKTPLRLLPTGMRSGLTNAEMTEMRKLAKSLPCHFALGRNRNHQGLAVAILKLWEKSLVAKIAVKRGIQNTNNKLMAEEIRNLTGGMLLLRNKYFIVVYRGKDFLPTSVAAALVERQELTKQIQDLEEKARSKVVEATSSSDDGQAPAGTLAEFYEAQSRWGREISAEEREKMIEESSRAKTAKLVRRIEHKLGVAQAKKLRAERLLSRIEASMVLSGPDDDQETITDEERVMFRKVGLRMTAYLPIGIRGVFDGVVENMHLHWKHRELVKLISKQKTLAFVEETARLLEYESGGILVSIDRVPKGYTLIYYRGKNYRRPIALRPRNLLTKAKALKRSVAMQRHEALSQHISELEKNIEEMKKEIGVTDDSDDENNWSSQDGPVSESFQDEEASLSAISDDDSDEDSNDEDSEFEEDKDFDFSDSGKHR 798
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 7290899 7295348 - Cp4.1LG18g07720.1 Cpe18g00760 485221

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe18g00760 798 SUPERFAMILY YhbY-like 198 290 IPR035920 -
Cpe18g00760 798 Gene3D - 197 295 IPR035920 -
Cpe18g00760 798 Gene3D - 594 697 IPR035920 -
Cpe18g00760 798 Gene3D - 384 481 IPR035920 -
Cpe18g00760 798 PANTHER CRS1 / YHBY (CRM) DOMAIN-CONTAINING PROTEIN 3 793 IPR045278 GO:0000375|GO:0003729
Cpe18g00760 798 ProSiteProfiles CRM domain profile. 593 693 IPR001890 GO:0003723
Cpe18g00760 798 MobiDBLite consensus disorder prediction 746 763 - -
Cpe18g00760 798 MobiDBLite consensus disorder prediction 76 100 - -
Cpe18g00760 798 MobiDBLite consensus disorder prediction 735 798 - -
Cpe18g00760 798 MobiDBLite consensus disorder prediction 44 100 - -
Cpe18g00760 798 MobiDBLite consensus disorder prediction 764 788 - -
Cpe18g00760 798 SMART CRS1_YhbY_2 199 282 IPR001890 GO:0003723
Cpe18g00760 798 SMART CRS1_YhbY_2 595 682 IPR001890 GO:0003723
Cpe18g00760 798 SMART CRS1_YhbY_2 385 469 IPR001890 GO:0003723
Cpe18g00760 798 ProSiteProfiles CRM domain profile. 383 480 IPR001890 GO:0003723
Cpe18g00760 798 MobiDBLite consensus disorder prediction 56 73 - -
Cpe18g00760 798 SUPERFAMILY YhbY-like 594 692 IPR035920 -
Cpe18g00760 798 PANTHER CRS1 / YHBY (CRM) DOMAIN-CONTAINING PROTEIN 3 793 - -
Cpe18g00760 798 Coils Coil 713 740 - -
Cpe18g00760 798 Coils Coil 478 505 - -
Cpe18g00760 798 Pfam CRS1 / YhbY (CRM) domain 200 282 IPR001890 GO:0003723
Cpe18g00760 798 Pfam CRS1 / YhbY (CRM) domain 385 469 IPR001890 GO:0003723
Cpe18g00760 798 Pfam CRS1 / YhbY (CRM) domain 596 682 IPR001890 GO:0003723
Cpe18g00760 798 SUPERFAMILY YhbY-like 385 476 IPR035920 -
Cpe18g00760 798 ProSiteProfiles CRM domain profile. 197 293 IPR001890 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe18g00760 - - - csv:101219948 1234.55
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe04g01403 Cpe18g00760 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe13g01143 Cpe-Chr13:9080201 Cpe18g00760 Cpe-Chr18:7290899 3.85E-133 dispersed
Cpe15g00235 Cpe-Chr15:2131735 Cpe18g00760 Cpe-Chr18:7290899 6.21E-24 dispersed
Cpe01g01543 Cpe-Chr1:9212909 Cpe18g00760 Cpe-Chr18:7290899 1.10E-07 transposed
Cpe03g01701 Cpe-Chr3:12941025 Cpe18g00760 Cpe-Chr18:7290899 8.58E-08 transposed
Cpe06g00762 Cpe-Chr6:4816483 Cpe18g00760 Cpe-Chr18:7290899 4.51E-09 transposed
Cpe18g00352 Cpe-Chr18:4921024 Cpe18g00760 Cpe-Chr18:7290899 1.03E-165 transposed
Cpe18g00760 Cpe-Chr18:7290899 Cpe04g01403 Cpe-Chr4:11314103 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g317 . Blo16g00136 . . . Bpe13g00351 . . . . Cma10g00232 Cma11g00271 Car10g00218 Car11g00248 . . Cpe04g01403 . . . . . . . Cla06g01466 Cam06g1619 Cec06g1682 Cco06g1674 Clacu06g1584 Cmu06g1535 Cre06g2346 . . Cone13ag0281 . . . . . . . . . . . . . . Cmo10g00246 Cmo11g00277 . . . . . Cpe18g00760 . . . . . . . . . . . . . . Lsi06g01329 Csa01g00386 Chy02g02360 Cme02g01739
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010794 0 2 2 0 1 0 2 0 1 0 0 1 1 1 1 2 1 1 1 0 1 1 1 1 1 0 1 5 3 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe18g00760 Cpe_Chr18 FPKM 4.074971 4.545392 1.207492 0.839562 2.011181 2.146307 2.436539 0.291154 0.733173 0.577701