Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe18g00761 ATGCGAGGGTATCGCTACAGTGTTCAGATGGCTGTGCTCAGCAAAACCAAAAGTACGCTCGAGGGGCTTGTTAGGGACAGTTCATTGAAATGGTTGTTAGGGAAGCGAAGCTTTTTTGATGAAGAAATCGAAGAGATTGAAAAGTTTCCTTCTGCTCAGAGAAATTGGCTAAGCGAGCTCTCTCCATTTGCCAATGTGGTTGTTCGGAGATGTACTAAAATTCTTGGTGTTTCTGCTAGCGAACTTCAACAAAGCTTTAATACGGAGGCAATTGATTCACTAAAGCTTACCTCAAATTATGCAAGAAACTTGCTAGAGTATTGCTGTTTCAGGGCACTTGCACTATGTACGCAAAATACGGGCTATTTGGGTGATAAAAAATTTCGACGCTTGACCTTCGACATGATGATAGCTTGGGAAGCCCCAGCAAGTTCTAGCCAGCCTTTACTTGATATTGATGAAGAGGCATCAGTTGGGGTGGAGGCTTTCTCACGAATCGCTCCAGCAGTCCCCATAATTTCAAACGTGATTGTTAGTGAAAATCTTTTCGAGGCGCTGACTTCATCAACCGGTGCTAGACTTCAGTTCTCTGTTTACGACAAGTACCTGAGCGGGCTAGAAAAAGTGATAAAAAAAATGAAAAACCTATCACAGTCAAACCTTCTTCTGTCTGAAAGATCGTTAAGAGAAGAAAAGATTTTAGAAGTGGATGGAACAGTCACCACACAACCAGTTCTTGAACATGTTGGAATTTCTACCTGGCCTGGTAGGTTGGTTCTGACAGATCATGCACTTTACTTCGAAGCTCTTCGTGTCGTGTCATTTGACAAGGCAAAAAGATACGACTTATGCGATGATCTGAAGCAGGTTGTCAAACCTGAATTGACTGGACCATGGGGCACCCGGCTTTTCGATAAGGCGGTTCTATATAAATCCATTTCCTTATCTGAACCAGTAGTGGTCGAGTTTCCTGAACTTAAAGGCCATACTCGTCGAGATTTTTGGTTGGCAATCATCCGTGAGGTTTTGTATGTTCATAGATTTATCAACAAGTTTCAGATCAAGGGAATTCAAAGGAGTGAAGCACTTTCAAAAGCTGTACTTGGAATTCTACGTTTACAAGCCATTCAAGATATATGTTCTACACCATCGCTTGGATGCGAGTCGCTTCTCATGTTTAATCTTTGTGATCAGCTCCCAGGTGGGGACTTAATATTGGAAACCCTTGCGAATATGTCGGAAATGAAGGAGAATGAACGGACGAACAATTCTAGTCACGAAAAGGGAATGTATTCAATCTCAGCACTCGACGTTGCTTCTCACTTGGGATTTGGAATGGGAACAGCTTTTAGCGATTCGAACGAAAATGAGCTTGTTGTGGGTGAGATTGCTGTTGGAAAAATGACCCCTTTGGAAAGAGCGGTCAAGGAATCAAGAAACAATTATGAAAAGGTGGTGATGGCTCGAGAGACGGTCGATGGAGCGAAAGTAGATGGGATTGATACGAATTTGGCAGTGATGAAGGAATTAATGCTGCCAGTGAGTGAACTTGGGATGTACCTTGTTTCTTTGGCACTATGGGAAGATCCTATGAAGTCTTTGGCATTCTGTTTGGTCTCCAGTTACATAATCTGCAGGGACTGGCTGCCCTATGCCATCGCTCTGTTACTTGCATTCATGGCAGTTTTCATGATGGTTACACGACTTTTCAACCAAGGAGGTACCCCGGTCGACGAAGTTAAGGTCGTTGCCCCTCCAGCAATGAATGCAATGGAGCAGCTTTTAGCCGTTCAGAACACGATTTCTCAAGTGGAACAGTTGATCCAAGACGGGAATATCGTTCTCCTCAAGCTACGCGCTCTGCTGCTCGCCATTTTCCCTCAGGCGACGTTGAAGTTTGCAGTGTCTCTGCTAGTGATAGCCTTAACTCTAGCCTTCCTTCCCACAAAATACATACTTCTAATGGTGTTCTTGGAGGCATTTACAAGGTACTCACCCCCAAGAAAAGCAAGCACAGAGAGATGGACAAGAAGAGTAAAGGAATGGTGGTTCAGCATTCCAGCAGCTCCTCTGGTGCACTGGAAGAGTGCAAAAATGAAGCCGTTTAGATCCAACGTTGTGGAAACCCTTGAGCTTTTGCGCCATGCTGTTATGGAGAAGCCCTTTCTTCTATATTTGGCTCCTCTGTTTTTGCTTGCTTGGGCTTTCGAGAAATGGGTTTTTTCTTTCTCTAATTGGATCCCTCTAGCTATTGCCGTGTGGGCGACCTTACAGTATGGGAATTTTCAACGGCAACTAGTTGTAGAGGAGTTGAACAAAAAATGGAAGAAAATTGTATTGGAAACCTCGCCCACTACACCACTGGAGCACTGTAAATGGTTGAATAAGCTGTTGACTGAAATTTGGCCTAGCTATATCAACCCAAAACTTTCCTCAAAGTTCTCTTCTATTGTTGAGGTGAAACTCCTTTTCTGCTATGCTGTTTCTGAGAAACGATTGAAACACCGGAAGCCAACACTTATTAGAATCATGCGTTTGGGTTTTGATTGGGACACAAATGAAATAAGTATCATGTTGCAAGCCAAGTTGGCCATGCCATTTACTGGAACTGCACGGATTGTTATCAACAGCATTCACATAAAGGGTGATCTTCTCTTTAGGCCAATCTTGGATGGGAGAGCCATTTTGTATTCATTTGTTTGCACTCCAGAAGTGAGAATAGGAGTAGCTTTCGGAAGCGGCGGTAGCCAGTCGTTACCTGCAACAGAGCTTCCTGGTGTCTCTTCTTGGCTGGTTAAACTTCTAACAGACATCATAGTAAAGACAATGGTTGAACCTCGACGCCGCTGTCTCTCATTGCCAGCAGTTGACCTGGGTAAAAAGGCTGTCAGTGGTACATTATATGTGACAGTCATCTCAGCCAGTAAGCTTTCCAGGAATTACTCAAGAGGCACCTCTTCCAGAAAGCCTCTGAGTACTTATATGAATAGTCCCCCAGAAGAAAACTTAACTGATGAGGAAGAACTGCAGACATTTGTCGAGGTGGAACTTGAAGAGCTAAGTAGGAAAACTACTCTAAGATCAGGCTCCAACCCTGTATGGAATTCAACGTTCAATATGATTTTGCATGAAGATACAGGAACTCTTCGGTTCAATCTTTATGAATCTAACCCAAGCCATGTCAAGTATGATTATCTAGCCAGATCTGACTCTGAAGTGATAGCAAAGCATGCTGAGTTTTGTGGAAAAGAGGTTGAAATGGTTGTCCCGTTTGAAGGCGTTGGTTGTGGGGAGTTAACAGTGAAGCTTGTTACTAAAGAATGGCAATTTTCTGATGGTTCACATAGCTCGCTTAATCTTCATGTTAGACCTGAACAGCCGGTTAATGGGTCCTCAAGCTTTCCTTCAAGAACTGGAAGGAAAATTGCCATTACCATTGTAGAAGGAAAAGATCTTAGTTTGAAGGATAAATCTGCTAAGAGTGAGTCATATGTAAAACTGGAATATGGGAAGACTTCCTTTCAGGCTCTCCAGAAAACAAAAACTGCTGTTTCTGTAAATCCTAATTGGAATCAAAAGTTCGAATTTGATGAGATTGGAGGTGGTGAATACCTCAAGATAAAATGCTTTGGCGTAGATATATTTGGTGATGAAAACATAGGTACTGCCCGAGTGAATTTGGAAGGACTTCTTGAAGGAACAGTCAGGGACGTATGGGTACCCCTCGAGAAAGTAAATTCTGGAGAACTAAGGCTTCTGATAGAAGCACTCAAGGCAGATGACTATGAAGGATCAAGGGGTTCAAACACAGGCTCAAATAATGGTTGGATCGAACTTGTTATCATAGAAGCTAAAGATTTGGTTGCTGCTGATATTGGAGGAACAAGCGACCCTTATGTGAGAGTGCACTATGGAGACTTGAAGAAACGAACAAAGGTTATGTTCAAAACTTTAAATCCTCACTGGAACCAGACGTTAGAGTTCCCTGATAATGGGAGCCCTTTAGTGCTGTATGTAAAGGATCATAATGCTTTACTACCCACATCAAGCATTGGAGACTGTGTTGTTGAGTATCAAAGATTGCCTCCGAACCAAATGGCTGACAAATGGATACCTCTTCAAGGGGTGACAAGAGGAGAGATCCACATCCATATCACAAGAAAAGTTCCTGATCCACAGAAACAGAAAAGGCTTAGTTTAGATTCTGAATCATCTGCTATGAAGCAAACAATCAGCAAGTTTCGCAGTTTATTCGAGGAGGCTAATCTCGACGGTGTTTCGGCGACGTTGAGTGAACTAGAAAGCCTGGAGGAAGTGCAGCAGGAGTATATACTACAGCTTGAAACTGAACAAACGCTTCTCATAAATAAGATTAAGGAGCTTGGTCAGGAGATTCTTAATACTCCTTCAATTAGTCGGAGATCTTCTGGAAATTGA 4437 42.84 MRGYRYSVQMAVLSKTKSTLEGLVRDSSLKWLLGKRSFFDEEIEEIEKFPSAQRNWLSELSPFANVVVRRCTKILGVSASELQQSFNTEAIDSLKLTSNYARNLLEYCCFRALALCTQNTGYLGDKKFRRLTFDMMIAWEAPASSSQPLLDIDEEASVGVEAFSRIAPAVPIISNVIVSENLFEALTSSTGARLQFSVYDKYLSGLEKVIKKMKNLSQSNLLLSERSLREEKILEVDGTVTTQPVLEHVGISTWPGRLVLTDHALYFEALRVVSFDKAKRYDLCDDLKQVVKPELTGPWGTRLFDKAVLYKSISLSEPVVVEFPELKGHTRRDFWLAIIREVLYVHRFINKFQIKGIQRSEALSKAVLGILRLQAIQDICSTPSLGCESLLMFNLCDQLPGGDLILETLANMSEMKENERTNNSSHEKGMYSISALDVASHLGFGMGTAFSDSNENELVVGEIAVGKMTPLERAVKESRNNYEKVVMARETVDGAKVDGIDTNLAVMKELMLPVSELGMYLVSLALWEDPMKSLAFCLVSSYIICRDWLPYAIALLLAFMAVFMMVTRLFNQGGTPVDEVKVVAPPAMNAMEQLLAVQNTISQVEQLIQDGNIVLLKLRALLLAIFPQATLKFAVSLLVIALTLAFLPTKYILLMVFLEAFTRYSPPRKASTERWTRRVKEWWFSIPAAPLVHWKSAKMKPFRSNVVETLELLRHAVMEKPFLLYLAPLFLLAWAFEKWVFSFSNWIPLAIAVWATLQYGNFQRQLVVEELNKKWKKIVLETSPTTPLEHCKWLNKLLTEIWPSYINPKLSSKFSSIVEVKLLFCYAVSEKRLKHRKPTLIRIMRLGFDWDTNEISIMLQAKLAMPFTGTARIVINSIHIKGDLLFRPILDGRAILYSFVCTPEVRIGVAFGSGGSQSLPATELPGVSSWLVKLLTDIIVKTMVEPRRRCLSLPAVDLGKKAVSGTLYVTVISASKLSRNYSRGTSSRKPLSTYMNSPPEENLTDEEELQTFVEVELEELSRKTTLRSGSNPVWNSTFNMILHEDTGTLRFNLYESNPSHVKYDYLARSDSEVIAKHAEFCGKEVEMVVPFEGVGCGELTVKLVTKEWQFSDGSHSSLNLHVRPEQPVNGSSSFPSRTGRKIAITIVEGKDLSLKDKSAKSESYVKLEYGKTSFQALQKTKTAVSVNPNWNQKFEFDEIGGGEYLKIKCFGVDIFGDENIGTARVNLEGLLEGTVRDVWVPLEKVNSGELRLLIEALKADDYEGSRGSNTGSNNGWIELVIIEAKDLVAADIGGTSDPYVRVHYGDLKKRTKVMFKTLNPHWNQTLEFPDNGSPLVLYVKDHNALLPTSSIGDCVVEYQRLPPNQMADKWIPLQGVTRGEIHIHITRKVPDPQKQKRLSLDSESSAMKQTISKFRSLFEEANLDGVSATLSELESLEEVQQEYILQLETEQTLLINKIKELGQEILNTPSISRRSSGN 1478
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 7295754 7307087 - Cp4.1LG18g07780.1 Cpe18g00761 485222

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe18g00761 1478 ProSiteProfiles C2 domain profile. 945 1089 IPR000008 -
Cpe18g00761 1478 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 959 1060 IPR035892 -
Cpe18g00761 1478 SMART C2_3c 1276 1370 IPR000008 -
Cpe18g00761 1478 SMART C2_3c 966 1085 IPR000008 -
Cpe18g00761 1478 SMART C2_3c 1141 1239 IPR000008 -
Cpe18g00761 1478 MobiDBLite consensus disorder prediction 983 1000 - -
Cpe18g00761 1478 ProSiteProfiles C2 domain profile. 1258 1371 IPR000008 -
Cpe18g00761 1478 CDD C2 1277 1373 - -
Cpe18g00761 1478 PANTHER HEAT-INDUCIBLE TRANSCRIPTION REPRESSOR (DUF639) 10 696 - -
Cpe18g00761 1478 MobiDBLite consensus disorder prediction 983 1002 - -
Cpe18g00761 1478 Pfam C2 domain 965 1058 IPR000008 -
Cpe18g00761 1478 Pfam C2 domain 1277 1373 IPR000008 -
Cpe18g00761 1478 Pfam C2 domain 1141 1242 IPR000008 -
Cpe18g00761 1478 Gene3D C2 domain 1128 1258 IPR035892 -
Cpe18g00761 1478 Gene3D C2 domain 1265 1388 IPR035892 -
Cpe18g00761 1478 PANTHER HEAT-INDUCIBLE TRANSCRIPTION REPRESSOR (DUF639)-RELATED 10 696 - -
Cpe18g00761 1478 ProSiteProfiles C2 domain profile. 1123 1240 IPR000008 -
Cpe18g00761 1478 Gene3D C2 domain 964 1102 IPR035892 -
Cpe18g00761 1478 Pfam Plant protein of unknown function (DUF639) 468 692 IPR006927 -
Cpe18g00761 1478 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 1140 1255 IPR035892 -
Cpe18g00761 1478 CDD C2 1144 1242 - -
Cpe18g00761 1478 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 1272 1386 IPR035892 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe18g00761 - - - cmos:111429749 1287.71
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe04g01401 Cpe18g00761 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g01403 Cpe-Chr4:11314103 Cpe18g00761 Cpe-Chr18:7295754 0 dispersed
Cpe09g01005 Cpe-Chr9:8897627 Cpe18g00761 Cpe-Chr18:7295754 2.35E-10 dispersed
Cpe10g01057 Cpe-Chr10:6203864 Cpe18g00761 Cpe-Chr18:7295754 1.03E-98 dispersed
Cpe18g00761 Cpe-Chr18:7295754 Cpe19g00207 Cpe-Chr19:1688689 2.05E-97 dispersed
Cpe01g01939 Cpe-Chr1:16501959 Cpe18g00761 Cpe-Chr18:7295754 5.76E-176 transposed
Cpe15g00268 Cpe-Chr15:2652589 Cpe18g00761 Cpe-Chr18:7295754 1.27E-73 transposed
Cpe18g00761 Cpe-Chr18:7295754 Cpe20g00121 Cpe-Chr20:671208 0 wgd
Cpe18g00761 Cpe-Chr18:7295754 Cpe04g01401 Cpe-Chr4:11306179 0 wgd
Cpe18g00761 Cpe-Chr18:7295754 Cpe09g01138 Cpe-Chr9:9741524 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g315 . . Bda06g00807 Bda15g00515 Bpe12g00692 . . Bma12g01232 . . Cma10g00231 Cma11g00277 Car10g00216 Car11g00252 . . Cpe04g01401 . . . . . . . Cla06g01464 Cam06g1617 Cec06g1679 Cco06g1672 Clacu06g1581 Cmu06g1532 Cre06g2344 . . . . . . . . Blo13g00167 Blo15g00069 . . Bpe07g01036 . . Bma08g00061 . . Cmo11g00281 . . . . . Cpe18g00761 . . . . . . . . . . . . . . Lsi06g01327 Csa01g00389 Chy02g02358 Cme02g01736
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0019480 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 4
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe18g00761 Cpe_Chr18 FPKM 7.576459 7.767437 29.541536 30.601032 6.314191 6.696245 6.425622 25.608191 26.444984 28.864347