Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe18g00762 ATGGCGGATTTCCCTCCCCACTTCCAGACCTTCATCTCCCCTCATTCAATGGAGGATCCTAATCTCCACCTCCTCCCTCCTCCCTACTCTGTTCCACCCAACCCACCTCCCAATTTCACCAACTTCTTCCCATTCTCCGGCGACCCCTTCTTCCCCCACCAACCGCCACCGCAGTTTCCACCACCAAATCCGCCCGAACCCACCTCCAGCTTCCCACTTTTTCCCTCCCAAACTGCTCCCCCACCACCACTCTCTGAATTCCACGACATCAAGAAGAGAAAATCCATGGATGTTTCAGAAAGCAGCTCTGGAATCTCAACTCCCCAACTCTCTGAAAAAGGGTTCAACACAAAACAAAATTCAAGAAAAGGGAAGAGACTGAAAAGAACAGAGATAGAAGAAGAAGAGAAATCAAGAAGAGAAGTGGTTCATGTTAGAGCCAGAAGAGGGCAAGCCACTGATAGCCACAGTTTAGCTGAAAGGGTGAGAAGAGGAAAAATCAATGAACGACTAAGATGCTTGAAAGACATTGTCCCAGGATGCTACAAGACCATGGGGATGGCAGTCATGTTGGATGAGATAATTAATTATGTTCAATCTCTGCAGAATCAAGTGGAGTTCCTGTCTATGAAACTGGCTGCAGCTAGCTCTTTGTATGACTTCAACTTGGAGGTCGATGCCATATCAAAACTACAGAGAGCGAAGGCACATGAAGCAAAAGAAGAACTGGAGAGATTGATGAGAGAAGGATATGGAGGAATAGGTTGCTTCCACTCAAATTTGCCCCTTTGA 792 46.97 MADFPPHFQTFISPHSMEDPNLHLLPPPYSVPPNPPPNFTNFFPFSGDPFFPHQPPPQFPPPNPPEPTSSFPLFPSQTAPPPPLSEFHDIKKRKSMDVSESSSGISTPQLSEKGFNTKQNSRKGKRLKRTEIEEEEKSRREVVHVRARRGQATDSHSLAERVRRGKINERLRCLKDIVPGCYKTMGMAVMLDEIINYVQSLQNQVEFLSMKLAAASSLYDFNLEVDAISKLQRAKAHEAKEELERLMREGYGGIGCFHSNLPL 263
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 7310238 7312070 - Cp4.1LG18g07730.1 Cpe18g00762 485223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe18g00762 263 Coils Coil 198 218 - -
Cpe18g00762 263 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 149 219 IPR036638 GO:0046983
Cpe18g00762 263 MobiDBLite consensus disorder prediction 99 117 - -
Cpe18g00762 263 CDD bHLH_AtBPE_like 141 224 - -
Cpe18g00762 263 MobiDBLite consensus disorder prediction 26 135 - -
Cpe18g00762 263 Gene3D - 147 220 IPR036638 GO:0046983
Cpe18g00762 263 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 151 201 IPR011598 GO:0046983
Cpe18g00762 263 MobiDBLite consensus disorder prediction 26 42 - -
Cpe18g00762 263 Pfam Helix-loop-helix DNA-binding domain 155 202 IPR011598 GO:0046983
Cpe18g00762 263 SMART finulus 157 207 IPR011598 GO:0046983
Cpe18g00762 263 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 3 262 IPR024097 GO:0006355
Cpe18g00762 263 Coils Coil 229 249 - -
Cpe18g00762 263 MobiDBLite consensus disorder prediction 49 82 - -
Cpe18g00762 263 PANTHER TRANSCRIPTION FACTOR BEE 1 3 262 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe04g01400 Cpe18g00762 CCT
Cpe18g00762 Cpe20g00122 CCT
Cpe04g01400 Cpe18g00762 ECH
Cpe18g00762 Cpe20g00122 ECH
Cpe09g01137 Cpe18g00762 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g01437 Cpe-Chr2:12438218 Cpe18g00762 Cpe-Chr18:7310238 3.44E-41 dispersed
Cpe18g00762 Cpe-Chr18:7310238 Cpe02g00239 Cpe-Chr2:1229324 1.36E-37 dispersed
Cpe18g00762 Cpe-Chr18:7310238 Cpe20g00122 Cpe-Chr20:682246 8.40E-69 wgd
Cpe18g00762 Cpe-Chr18:7310238 Cpe04g01400 Cpe-Chr4:11301856 6.61E-91 wgd
Cpe18g00762 Cpe-Chr18:7310238 Cpe09g01137 Cpe-Chr9:9735254 1.87E-61 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50914 PF00010 HLH 4.50E-05 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe18g00762 - - csv:101209353 312.768