Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe18g00768 ATGGGGTGCTATCCTAGCAAGGACGCAGATTCAAAGGCCAGCCGAGTTGCGCGATGGCAAGCTACTGGCATAGTGGCTTTGCGAGACTCAAAGTTGAAGACATTTCCTGATGAAGTTCTTGACCTGGACAGATCTGTCCGCACCCTTGATGTAACAAACAATAAAATAGTTGATATTCCTATGGAAGTCTGCAAATTAACAAACATGCAGCGTCTGATATTGGCAGATAACCTTATTGAGCGTTTACCAATGAATTTGGGGAAGCTCCAATCTCTAAAAGTTATGATACTTGATGGAAATCACATTACCACATTACCCGATGAATTGGGTCAGCTAGTAAGGCTTGAACGTTTAACTGTCTCCCGAAATTTGCTATCATCCTTACCTGAAACCATTGGAAGCTTGCGGAATTTATTGCTTATCAATGTATCAAACAACAAGTTAATGTCACTCCCAGAATCAGTAGGAAGTTGCTTCTCCCTTGAAGAATTGCAAGCGAATGACAATCTCATGGAAGGCCTTCCCTCCTCTTTGTGCAATCTGATTCACTTGAAGTCGTTGTGTTTAGACAATAACAATATCGGCCAGTTACCGTCAAACCTGTTGAAAGATTGCAAAGCATTGCAGAAGGTATCTTTGCATGGTAATCCAATTTTAATGGATCAATTTCAGCAGATGGAAGGATTCGAGGATTTTGAAGCAAGGAGAAAAAAGAAAATTGACAAACAAATTGATTCCAATGTCATGATTAGTTCCAAGGGCCTCGATGAGGGTGTCGACCTATAA 786 40.97 MGCYPSKDADSKASRVARWQATGIVALRDSKLKTFPDEVLDLDRSVRTLDVTNNKIVDIPMEVCKLTNMQRLILADNLIERLPMNLGKLQSLKVMILDGNHITTLPDELGQLVRLERLTVSRNLLSSLPETIGSLRNLLLINVSNNKLMSLPESVGSCFSLEELQANDNLMEGLPSSLCNLIHLKSLCLDNNNIGQLPSNLLKDCKALQKVSLHGNPILMDQFQQMEGFEDFEARRKKKIDKQIDSNVMISSKGLDEGVDL 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 7328122 7333813 + Cp4.1LG18g07620.1 Cpe18g00768 485229

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe18g00768 261 Gene3D Ribonuclease Inhibitor 6 243 IPR032675 -
Cpe18g00768 261 PANTHER PLANT INTRACELLULAR RAS-GROUP-RELATED LRR PROTEIN 7 7 253 - -
Cpe18g00768 261 PANTHER LEUCINE-RICH REPEAT-CONTAINING 7 253 - -
Cpe18g00768 261 SUPERFAMILY L domain-like 25 221 - -
Cpe18g00768 261 SMART LRR_bac_2 160 177 - -
Cpe18g00768 261 SMART LRR_bac_2 112 131 - -
Cpe18g00768 261 SMART LRR_bac_2 89 108 - -
Cpe18g00768 261 SMART LRR_bac_2 181 200 - -
Cpe18g00768 261 SMART LRR_bac_2 135 154 - -
Cpe18g00768 261 SMART LRR_typ_2 112 134 IPR003591 -
Cpe18g00768 261 SMART LRR_typ_2 181 204 IPR003591 -
Cpe18g00768 261 SMART LRR_typ_2 66 88 IPR003591 -
Cpe18g00768 261 SMART LRR_typ_2 135 158 IPR003591 -
Cpe18g00768 261 SMART LRR_typ_2 89 111 IPR003591 -
Cpe18g00768 261 Pfam Leucine rich repeat 44 102 IPR001611 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe18g00768 - - - csv:101206028 484.182
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe04g01470 Cpe18g00768 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00981 Cpe-Chr5:6389192 Cpe18g00768 Cpe-Chr18:7328122 1.97E-54 dispersed
Cpe16g00668 Cpe-Chr16:6996352 Cpe18g00768 Cpe-Chr18:7328122 1.42E-53 dispersed
Cpe18g00768 Cpe-Chr18:7328122 Cpe19g00903 Cpe-Chr19:6566819 8.61E-16 dispersed
Cpe18g00768 Cpe-Chr18:7328122 Cpe04g01470 Cpe-Chr4:11694683 1.06E-176 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g624 . . . . . . . . . . Cma10g00225 . Car10g00209 Car11g00122 . . Cpe04g01470 Bhi02g00262 Tan09g2060 . . . . . Cla06g01553 Cam06g1716 Cec06g1777 Cco06g1776 Clacu06g1684 Cmu06g1629 Cre06g2440 . . Cone13ag0044 Cone19ag0049 . . . . . . . . . . . . . Cmo10g00236 Cmo11g00201 . . . . . Cpe18g00768 . . . . . . . . . . . . . . Lsi06g01427 Csa01g00277 Chy02g02455 Cme02g01843
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008328 2 2 1 0 0 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 2 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe18g00768 Cpe_Chr18 FPKM 84.937988 91.36544 34.269939 32.529636 24.435143 19.612461 18.23311 30.444294 31.640139 30.043262