Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe18g00770 ATGGAAGCTAATCTAGCCTCAAGACATGTTTGCAAGCTCTGTAATAAGAGCTTTGCTTGTGGGAGATCCTTGGGAGGGCATATGAGGTCTCATTTGACCAATAACTTAGTTGATTCTGATGAGAAACATAGCAGAACAAGCCTTCAATTTGCTGATTTCAGTGCTGGAAGCGTATCAAACATGGAGGAGGAGGAGGAGGTAGATTTGGAAGGTGGAAATCTAGCTGGGTTTGGTTATGGTCTTAGAAAGAATCCCAAAAAGACTCAGAAACTTGAGTTTTTAAGTGAAGAATCTTCACTCCAAGACAAGTTCTGCAGGGAATGTGGTAAAGGGTTTCAATCATGGAAGGCTCTGTTTGGTCACATGAAATGCCATTCTGAAAGAGTTGTTTCCAGTAGTCAAGAGCTGGAAGAACCAGATTCCCATATCACTGATGCTAAACAGAAGCTGGTGATGGATATCCAATCTGATAATGAAATTGAAGCTCCTAACAACAAGAGAAAGAGATCAAGAAGAAGAAGAACAGCCCAAATGGGCACGGAAAATTCAACGACCTCCTTCTCTTTTGCCACTGATTCCTCTGTTTTTGAAATCCAGCAAGAACAAGAAGTTGCCATCTCCTTGATGTTGCTTTCCATGGACGTGGGGAATTGGGTTGGCTTCAATTCTCCAGTTGAGTCCTCAGATAACAATTCAAAGTTTCTTGATACCCCATCTGCCGTTGAGAGGAAAACCTCTGTTTCCAATAAACTCAAGGTGAAGAAAATGGAGTCTGAAGTGAAGAAACCAGAGCAAAGTTGTTCTGCGTTTATGAACAAGGGAAAGATGATAGATCAAAGAGGTGGATCTAAATCTTTCCCCCCAAAAAATGACCAAAACCAAGCTAGATTCAGCTCTGATATGATCGCAAAATCCGGAAAGAAGACATTAGCAGAGTTTTGGGATTCAAAAATCTGCAAGAAACCCAAAAAGAGAAGCAAATTTGAGTGTGATATTTGCAATAAGATCTTCCACTCATATCAAGCACTTGGTGGGCATAGAGCAAGCCACAAGAAGCTAAAGGGTTGTTTCGTTGAGTCAGCCATGGAAGAATACGAAGAAGAAGAAATAGACAGCGAGCGCAGTGCAGAAATGGCGATTTCTGCATACCCAACAGCCGAAAACAAGCTTTCGAAAGGCCTCAACAATGGCGAAATGGGTTATCAGATTCCAAAAAAGAGCAGCAAACACAAATGCCCAATTTGCGAGAAAGTGTTCGCATCAGGTCAAGCACTTGGTGGGCATAAAAGATCTCATTTGATCAGTGGATTCAAAAACAGAGCAACAATTCAAATTCAAAAACAAGTCCCAGAAATCAGGAGGTTTCTGGACCTGAATCTTCCTCCTGAACCAGTCGAAATAGAAAACAAGAACCACAATTTAGCATCATTAAAGCACCCATGGTGGGCTGCAGCTAATGAACACAAGCACGAGGCTCTTGTGAATGTGGGATTTCATATCTAA 1503 41.65 MEANLASRHVCKLCNKSFACGRSLGGHMRSHLTNNLVDSDEKHSRTSLQFADFSAGSVSNMEEEEEVDLEGGNLAGFGYGLRKNPKKTQKLEFLSEESSLQDKFCRECGKGFQSWKALFGHMKCHSERVVSSSQELEEPDSHITDAKQKLVMDIQSDNEIEAPNNKRKRSRRRRTAQMGTENSTTSFSFATDSSVFEIQQEQEVAISLMLLSMDVGNWVGFNSPVESSDNNSKFLDTPSAVERKTSVSNKLKVKKMESEVKKPEQSCSAFMNKGKMIDQRGGSKSFPPKNDQNQARFSSDMIAKSGKKTLAEFWDSKICKKPKKRSKFECDICNKIFHSYQALGGHRASHKKLKGCFVESAMEEYEEEEIDSERSAEMAISAYPTAENKLSKGLNNGEMGYQIPKKSSKHKCPICEKVFASGQALGGHKRSHLISGFKNRATIQIQKQVPEIRRFLDLNLPPEPVEIENKNHNLASLKHPWWAAANEHKHEALVNVGFHI 500
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 7341355 7342857 + Cp4.1LG18g07610.1 Cpe18g00770 485231

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe18g00770 500 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 6 495 - -
Cpe18g00770 500 SUPERFAMILY beta-beta-alpha zinc fingers 328 432 IPR036236 -
Cpe18g00770 500 MobiDBLite consensus disorder prediction 247 262 - -
Cpe18g00770 500 ProSiteProfiles Zinc finger C2H2 type domain profile. 328 355 IPR013087 -
Cpe18g00770 500 MobiDBLite consensus disorder prediction 246 265 - -
Cpe18g00770 500 ProSiteProfiles Zinc finger C2H2 type domain profile. 103 126 IPR013087 -
Cpe18g00770 500 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 6 495 - -
Cpe18g00770 500 Pfam C2H2-type zinc finger 8 32 - -
Cpe18g00770 500 Pfam C2H2-type zinc finger 105 126 - -
Cpe18g00770 500 Pfam C2H2-type zinc finger 410 433 - -
Cpe18g00770 500 Pfam C2H2-type zinc finger 328 352 - -
Cpe18g00770 500 ProSitePatterns Zinc finger C2H2 type domain signature. 330 350 IPR013087 -
Cpe18g00770 500 ProSiteProfiles Zinc finger C2H2 type domain profile. 9 36 IPR013087 -
Cpe18g00770 500 ProSiteProfiles Zinc finger C2H2 type domain profile. 410 432 IPR013087 -
Cpe18g00770 500 MobiDBLite consensus disorder prediction 153 185 - -
Cpe18g00770 500 ProSitePatterns Zinc finger C2H2 type domain signature. 412 432 IPR013087 -
Cpe18g00770 500 ProSitePatterns Zinc finger C2H2 type domain signature. 105 125 IPR013087 -
Cpe18g00770 500 SUPERFAMILY beta-beta-alpha zinc fingers 9 125 IPR036236 -
Cpe18g00770 500 SMART c2h2final6 103 125 IPR013087 -
Cpe18g00770 500 SMART c2h2final6 328 350 IPR013087 -
Cpe18g00770 500 SMART c2h2final6 9 31 IPR013087 -
Cpe18g00770 500 SMART c2h2final6 410 432 IPR013087 -
Cpe18g00770 500 ProSitePatterns Zinc finger C2H2 type domain signature. 11 31 IPR013087 -
Cpe18g00770 500 Gene3D Classic Zinc Finger 6 125 - -
Cpe18g00770 500 Gene3D Classic Zinc Finger 325 432 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe18g00770 - - - mcha:111006797 741.11
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g01364 Cpe-Chr2:12009006 Cpe18g00770 Cpe-Chr18:7341355 2.10E-06 dispersed
Cpe08g00643 Cpe-Chr8:4321086 Cpe18g00770 Cpe-Chr18:7341355 9.37E-10 dispersed
Cpe16g00350 Cpe-Chr16:5262364 Cpe18g00770 Cpe-Chr18:7341355 6.01E-08 dispersed
Cpe18g00770 Cpe-Chr18:7341355 Cpe20g00064 Cpe-Chr20:309617 2.50E-78 dispersed
Cpe01g01500 Cpe-Chr1:8946269 Cpe18g00770 Cpe-Chr18:7341355 5.85E-10 wgd
Cpe18g00770 Cpe-Chr18:7341355 Cpe02g01035 Cpe-Chr2:9586575 3.10E-14 wgd
Cpe18g00770 Cpe-Chr18:7341355 Cpe04g01472 Cpe-Chr4:11707372 0 wgd
Cpe18g00770 Cpe-Chr18:7341355 Cpe09g00215 Cpe-Chr9:1236069 3.81E-11 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g613 . Blo16g00175 . . . . . . . . . . Car10g00207 Car11g00174 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe15g00587 . . . . . . . . . . Cpe18g00770 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002585 2 2 1 2 2 1 4 1 1 1 1 1 4 2 2 4 1 0 4 1 2 2 2 2 2 2 2 4 2 1 58
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50915 PF13912 zf-C2H2_6 5.30E-11 CL0361 Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe18g00770 Cpe_Chr18 FPKM 3.111843 3.814934 0.797568 1.21528 0.395724 0.0 0.480944 0.354284 0.161571 0.147525