Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe18g00771 ATGTTCCATCAGCAGCAGCACCCTGCTCCTCCTCCTTCCTCTTCTTCTTCTTCTTCCGTGCCTTTTTATTTCCCTCCTCAGCCTCACATTGTGAATGGTAATCCTTCTTCTTTCGCTCATTTTCCTCAGCCTGTTTTACCCCCCGGAGTCGCTTCCGAGCCGGTCCTGCATCCTCCCGGCACCGAACCTTATTCCAATTCCGCCATATTAACCTCGACCTATGTTGGATTGGAGGGCCAACCGCAATTTTATGCTGACCCAACTGTTGCTTCTCATAATTGGGTCGTTCCGCAGTCTGACCCCGCTGGATTTGCATTCATATCTTTGCTTGAGAATCAGATAGCTTCCACGAGTTCTAATTCTGTACTGGAAGGCAATTGGGCAACTCAATCCTTGGCACACAACGCAACTAGGACGAAACATGTGAAATCCAAGTTCACCCAGCCTGTGCGATGTGAAGTTTGCAAAATTAACTGCAACAGTAAAGATGTTTTTGATAAACATGTAATGGGGAAGAAACATAAGAAGAATTTGGAAGCACAAAACAGTTCCTTGACGGGAAGTACTTCCTCTGATAGGAACATATATATGCTAAACCAAACGGGCAGTGTCAGTGGTCAAGTGGCACAGGGGGCTCCGGATGTGCCTGCTGCTATTAAAGGTCTAAATACAAAGAAGCGAAAACTTACAGATAGCAGTACGAAAGCTGATTCTGCGAGGGTATGTACTGTATGCAACGTTGTTTGCAATAGTCAAGAGGTTTTTGATAAACATCTGAGTGGGAAAAAGCACGCAGCTCAGGCTGTCTTAACATCCCAAAATCCCTATGCTGCTGCAATCCGGTCTCAATATGATGGCAGCTCGAAGAAGAAACCGAAAAAGAACAAGGTCGTTCAGTTTGCCTGGTGTGAGGTTTGCAAGATCAGCTGTAACAGCAATGAAATCTATGCCAAGCACCTATCAGGAAAGAAACACTTGAAGAACATAGAAAAAGCAGAAAAGGGATGGAGTGATGCAGGTGCTTCGAACGCTCTGCAATCGGCAACAGAGCCAATTATCGGGCCAACGGAAAACCCATCTACCAACAACCCAAGTAGTGATGATATACAGAAAACACAGAAGAGTTCAGCAGCTCAAACACCAGAAGATCTGGAGACGAAGAAACGCAAGATTGTGGAAAGTGGTACGGCTGCAGATTCTGTTAGAACCTGCAGCATTTGCAATGTGGTCTGCAATAGCCAGACAGTGTTTGATTCTCATCTGTCTGGCCAGAAACATGCTTCCATGATGAAGAAACAAGGTGTCTCTGGAATGTCAATGCTAGTTCCTCCTTTAGTAACTGCACTTCCTAACTAG 1356 45.43 MFHQQQHPAPPPSSSSSSSVPFYFPPQPHIVNGNPSSFAHFPQPVLPPGVASEPVLHPPGTEPYSNSAILTSTYVGLEGQPQFYADPTVASHNWVVPQSDPAGFAFISLLENQIASTSSNSVLEGNWATQSLAHNATRTKHVKSKFTQPVRCEVCKINCNSKDVFDKHVMGKKHKKNLEAQNSSLTGSTSSDRNIYMLNQTGSVSGQVAQGAPDVPAAIKGLNTKKRKLTDSSTKADSARVCTVCNVVCNSQEVFDKHLSGKKHAAQAVLTSQNPYAAAIRSQYDGSSKKKPKKNKVVQFAWCEVCKISCNSNEIYAKHLSGKKHLKNIEKAEKGWSDAGASNALQSATEPIIGPTENPSTNNPSSDDIQKTQKSSAAQTPEDLETKKRKIVESGTAADSVRTCSICNVVCNSQTVFDSHLSGQKHASMMKKQGVSGMSMLVPPLVTALPN 451
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 7344186 7347815 + Cp4.1LG18g07600.1 Cpe18g00771 485232

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe18g00771 451 PANTHER ZINC FINGER RNA-BINDING PROTEIN 279 436 - -
Cpe18g00771 451 PANTHER ZINC FINGER RNA-BINDING PROTEIN 27 270 - -
Cpe18g00771 451 MobiDBLite consensus disorder prediction 350 391 - -
Cpe18g00771 451 Pfam Zinc-finger of C2H2 type 302 325 - -
Cpe18g00771 451 Pfam Zinc-finger of C2H2 type 242 264 - -
Cpe18g00771 451 Pfam Zinc-finger of C2H2 type 403 426 - -
Cpe18g00771 451 Pfam Zinc-finger of C2H2 type 151 174 - -
Cpe18g00771 451 SUPERFAMILY beta-beta-alpha zinc fingers 285 332 IPR036236 -
Cpe18g00771 451 SUPERFAMILY beta-beta-alpha zinc fingers 398 432 IPR036236 -
Cpe18g00771 451 Gene3D Classic Zinc Finger 282 333 - -
Cpe18g00771 451 Gene3D Classic Zinc Finger 380 433 - -
Cpe18g00771 451 Gene3D Classic Zinc Finger 133 182 - -
Cpe18g00771 451 Gene3D Classic Zinc Finger 219 270 - -
Cpe18g00771 451 SUPERFAMILY beta-beta-alpha zinc fingers 234 267 IPR036236 -
Cpe18g00771 451 SUPERFAMILY beta-beta-alpha zinc fingers 134 181 IPR036236 -
Cpe18g00771 451 MobiDBLite consensus disorder prediction 350 380 - -
Cpe18g00771 451 MobiDBLite consensus disorder prediction 1 21 - -
Cpe18g00771 451 SMART c2h2final6 240 264 IPR013087 -
Cpe18g00771 451 SMART c2h2final6 402 426 IPR013087 -
Cpe18g00771 451 SMART c2h2final6 150 174 IPR013087 -
Cpe18g00771 451 SMART c2h2final6 301 325 IPR013087 -
Cpe18g00771 451 SMART ZnF_U1_5 399 433 IPR003604 GO:0003676|GO:0008270
Cpe18g00771 451 SMART ZnF_U1_5 237 271 IPR003604 GO:0003676|GO:0008270
Cpe18g00771 451 SMART ZnF_U1_5 298 332 IPR003604 GO:0003676|GO:0008270
Cpe18g00771 451 SMART ZnF_U1_5 147 181 IPR003604 GO:0003676|GO:0008270
Cpe18g00771 451 PANTHER - 279 436 - -
Cpe18g00771 451 PANTHER - 27 270 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe18g00771 - - - cmax:111485559 865.529
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g614 . . Bda06g00530 . . . . Bma12g00974 . . Cma10g00222 . Car10g00206 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe07g00764 . . . . . . . . . . . Cpe18g00771 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011197 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 2 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe18g00771 Cpe_Chr18 FPKM 6.383841 6.251668 9.711568 10.499051 16.342155 18.49011 17.244629 12.996525 12.460006 11.28887