Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe18g00772 ATGAGTTCTTATGCTGACTTGTGTAATTTGGATTCTTCTTTTTCATCGAATTCTTCAAAACCACAGCTGAATTCTGCGTTTACATTTCCAGAAATGTCACATTTTAGGAAATCCCCCATACGTTTTGCTAGGCACGGCTCATCCCAACCTGCTAATCCTGCTCGTTCCCCTTCACAACCAATTGATTCCAATGATAATTTAGACAAGAGGCAAAAACACAAGTCCTCAAGAATCACCTCTTCTCATCAAGCAACTGTAGCACCTAATCCTAGCTCCAACCTTTTCGATGATCATCTTGAGAAAGAGACCGATTCTTCTTCACATTCTTCATATTCATGGTCATCAAGAAACAGATACAAGAATGATTTCAGGGACTCTGGTGGGCTTCAGAGTCAGACAGTGGAGGAGTTGGAGAATTATGCTGCTTACAAGGCTGAGGAGACAACTAACGCAGTCAACAACTGCCTGAAGATTGCTGAAGATATGAGAGAAGATGCAACCAATACCTTAGTTGCTCTCCATCATCAGGGTGAGCAAATCACTCGCACCCACATGGTTACTGCCGATATCGACAACGACCTCAGTCGGGGTGAGAAACTTCTAGGAAGCTTAGGAGGAATATTCTCCAAGACTTGGAAGCCAAAGAAGGGTCGCGATCAGGCTGTGATAAGCAAGGGCAACCATTTGGAGCAAAGGGAGAGGTTGGGGTTAAGTCGGGCACCCAACCCACGGTCCTCGCGCGCCCCACATCCTGAGCCAACCAACTCACTTCAGAAAGTTGAGGTGGAAAAGGTGAAACAAGAGGATGCTCTTTCAGATTTGAGCAATATATTGGGAGAGCTCAAAGGAATGGCTGTTGATATGGGAACTGAACTCGACAGGCAAAATAAAGCTCTGGATAACTTGTTTGACGACGCGGACGAGATCACGGTTCGTGTTGATAATGCTAATCGGCGAGCACGGCACTTGCTTAGAAAGTAG 981 45.46 MSSYADLCNLDSSFSSNSSKPQLNSAFTFPEMSHFRKSPIRFARHGSSQPANPARSPSQPIDSNDNLDKRQKHKSSRITSSHQATVAPNPSSNLFDDHLEKETDSSSHSSYSWSSRNRYKNDFRDSGGLQSQTVEELENYAAYKAEETTNAVNNCLKIAEDMREDATNTLVALHHQGEQITRTHMVTADIDNDLSRGEKLLGSLGGIFSKTWKPKKGRDQAVISKGNHLEQRERLGLSRAPNPRSSRAPHPEPTNSLQKVEVEKVKQEDALSDLSNILGELKGMAVDMGTELDRQNKALDNLFDDADEITVRVDNANRRARHLLRK 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 7349112 7351385 + Cp4.1LG18g07630.1 Cpe18g00772 485233

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe18g00772 326 SMART tSNARE_6 256 323 IPR000727 -
Cpe18g00772 326 SMART tSNARE_6 137 204 IPR000727 -
Cpe18g00772 326 MobiDBLite consensus disorder prediction 38 117 - -
Cpe18g00772 326 SUPERFAMILY SNARE fusion complex 261 324 - -
Cpe18g00772 326 MobiDBLite consensus disorder prediction 1 25 - -
Cpe18g00772 326 PANTHER SYNAPTOSOMAL ASSOCIATED PROTEIN 57 326 - -
Cpe18g00772 326 MobiDBLite consensus disorder prediction 218 237 - -
Cpe18g00772 326 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 266 323 IPR000727 -
Cpe18g00772 326 MobiDBLite consensus disorder prediction 218 259 - -
Cpe18g00772 326 MobiDBLite consensus disorder prediction 49 64 - -
Cpe18g00772 326 CDD SNARE_SNAP25N_23N_29N_SEC9N 139 203 IPR044766 GO:0005484|GO:0031201
Cpe18g00772 326 CDD SNARE_Qc 266 322 - -
Cpe18g00772 326 Gene3D - 128 205 - -
Cpe18g00772 326 Coils Coil 257 277 - -
Cpe18g00772 326 Coils Coil 299 326 - -
Cpe18g00772 326 PANTHER TARGET SNARE COILED-COIL DOMAIN-CONTAINING PROTEIN-RELATED 57 326 - -
Cpe18g00772 326 MobiDBLite consensus disorder prediction 78 92 - -
Cpe18g00772 326 Gene3D - 246 326 - -
Cpe18g00772 326 SUPERFAMILY SNARE fusion complex 132 202 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe18g00772 K18211 SNAP25; synaptosomal-associated protein 25 - csv:101205328 492.656
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe04g01473 Cpe18g00772 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe18g00772 Cpe-Chr18:7349112 Cpe20g00060 Cpe-Chr20:298428 2.58E-109 dispersed
Cpe01g01498 Cpe-Chr1:8937991 Cpe18g00772 Cpe-Chr18:7349112 1.93E-101 wgd
Cpe18g00772 Cpe-Chr18:7349112 Cpe02g01037 Cpe-Chr2:9597807 2.39E-16 wgd
Cpe18g00772 Cpe-Chr18:7349112 Cpe04g01473 Cpe-Chr4:11710465 2.04E-146 wgd
Cpe18g00772 Cpe-Chr18:7349112 Cpe09g00212 Cpe-Chr9:1223998 7.11E-99 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g617 Blo04g00786 . . . . . . . Cmo13g01138 . . . Car10g00205 . . . Cpe04g01473 . . . . . . . . . . . . . . . . . . . . . . . . . Bda14g00867 . . Bma03g00844 . . Cmo10g00232 . Cma13g01086 . Car13g00924 . . Cpe18g00772 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001344 1 5 1 1 1 2 4 2 2 2 1 2 4 2 2 4 2 4 4 2 2 4 2 2 2 2 2 6 4 1 75
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe18g00772 Cpe_Chr18 FPKM 5.199518 4.578701 58.190487 59.862476 61.580368 63.986198 66.080933 52.900509 57.512581 53.47031