Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe18g00774 ATGGATATCACTGAAGAGCAACGAAAGCGAGCCGAAGCAAACCGTTTAGCTGCCATAGCCAAACGCAAAGCACTGGTTGAATCTTCTAATGGCCAACTACAACGCCAGGACCCATGGAAGCTTTTCAAATGTCGCAAGCTTTCCACTGAGCTAAGTGCTGCCAGTGCAGTCCAATCTTCGAAAAGATTATCCTGTAACAATACCCACTTGCCTGAAAGGTTTCGAGTAAGGCTGGAAATTTCCTCCCCTGATTCGTTCTCGATCACGCCGGAAGCCGTGGAAGGATACTCTTACCCGGGAGAGGAGAATTGCTTCAGGAAATTGAGCGACTTTTTATTCAATGTCACTCATTCTCACTACACACAAATTATAGGCGGAGGAAAGGCTTGTGTCTATAAGCTGAGGGACTATTGTCCTGTTTTGAAATGTTTAAAGAACTCCAAGGACATTGATGTTTATGAGATACCATGGACTACATTTAATGTGGTCGAGAGACTTTCACATTCATTTACTTTAGGGCGATGGATGCCATGCAGGCCAGAGCATCTGTCAGATGAGAAGGTCGATGAACTAATGCAGAAATTACCTGATCGGTTACTGAATAGACTCTTACCTTTCCAACTTGATGGTGTAAGATTTGGCTTGCAGAGGGGTGGCCGATGTTTGATAGCTGATGAAATGGGTCTTGGGAAAACACTGCAGGCTATTGCAATTGCTAGCTGCCTCATGGATGAAGAGGGTTCAATGCTCGTTGTTTGCCCTGCTGTTTTACGTTTTTCTTGGGCTGAAGAACTAGAGCGTTGGCTTCCATTTTGTTTGCCTTCTGATATTCATCTTGTTTTTGGTCATCTGGACAATCCTTGCCATTTATCAAAATTCCCGAAAGTGGTGGTAATATCATATACGATGCTTCACCGTTTATGTAAGAGCATTCTTCAGCAGAAGTGGTCTTTATTGATTGTTGATGAATCTCATCACGTAAGATGTGCCAAGAAGTCATCTGAATCAGAAGAGATAAAGGCAGTTCTTGATTTATCAACAAAGGTCCAGCATATTATTCTTCTATCTGGAACTCCTTCTTTATCAAGTTCATGTGCTCAATTGTGTATCTACTGTAGGCCTGGTTTGCTGGGAAAGACCAAGTATGAGTTTGCAAAAACTTACTGCGATGTCAAATTTGTTCGTACTTCTCAGGGGAAAACTTTTAAGGACTTCTCGAAAGGCATTCGATTAGATGAGTTGAATGTGCTGCTCAAGCAAACTGTTATGATAAGACGTTTGAAAGAGCATGTATTGGTTCAACTACCACCCAAACGCAGGCAGATCATAAGATTGTTGTTGAAAAGTTCTGATATAGTTGGAGCAAAGGCGGCTACTAGGGAGGTGATCAATGGTGATCAGGATAGAAATGCTGCTGAAAACAATACAGACGATATTTTGGGGGAAGAGGAACCTGATGATGGTGGAGCTTGCGGAACTGGGAAACTTTCCTTTCATGAACTGGGTGTTGCAAAGCTATCTGGTTTTCGTGAATGGTTTTCTATTCATCCAATTATTTCTGAAACAGATGGTTTGATGGACTTGGATTTGAAGACCGATTCCCAAAAGATGATCATTTTTGCTCATCATCATAAAGTTCTCGATGGAGTACAAGTTAAAATTGCTATCATAGGTATTACTGCTGGTGGAGTTGGACTTGATTTCTCTTCAGCACAAAATGTTGTGTTTTTGGAATTGCCTCAGTCACCGTCGTTGATGCTTCAGGCCGAGGATAGAGCTCACAGGCGAGGGCAGACCAAGGCAGTCAACATATACATTTTCTGTGCTAAGGATACGATAGATGAGTCTCATTGGCGAAAATTGAACAAGAGTTTGCGCCGTGTTACCTCAACTACTGATGGAAAATATGATGCAATTCAAGAAATAGCGGTAGAACGTGTTTCTTATCTAGAAGCATGTGGCAGAAGTGGTACAAGTTCTGAGAGTCAGATGAACTCAGCAACATGCATTAAACTCTCCTCAAAAATCGCGAGAGCTCAAGGCCATGGCTCTTTGGAGGTTGAAGTTAATGATGAGCTGAATGGCTCTTTTAAGGTTTTAGTAAAAGATGAGTTGAATGCTAAGACTGATTATCCACCTGACCAAAATGATGACATCGACATTACAACTCAAACAGATCAAGTAGCCATTAAGAAGAGAATCTTACTACAGTTGACAATAGAAGTCTTGAAAGTTCTTCCTGTCCTCCATTGGAAAAGCAAGGTGGAGAAAAGGATCAAGCAGAGAAGAATGCAGGAAGAGAAGTTATGTTCTGGGACATCAAAAGTTGATAATGGTGAACCCCATCTGATCACTGAGCCTGAAAAAAGTTCCTTGAACCATGTTCATGTTCTGCGATTTGAGATTAGTCAGTATACAGGAAGGGTCCACTTGTATAGATGCATTCCTGGGATAGACTTGCGACCAAGGCCACTATTCCTTAATTTTCGACCAGAAGAAGTTGAATTGATAGACTGTTCTGTCGATGACAGTGAAAAAACAGATTTCAATTTGGACGCCACACTCTACAAACTAGCTCTTCAAGAATTTCTCAGTGAATGGCGTAAGTTGAGACCCATTGAGCAAAGAAAGTTATATGGAAAACCACTGCAACTTCCTTTGGATATTGAACTGTGCTACTTGAAGGAAAGCATCAACCACAACGCTGATGGAGTGTTGAAGGGTAAGAGTTTGCGGCGGACAACACCAATCGATGACATTAGCCGACCATTACCATCTTCTGCTGTATGGAAACTGGTCCAATTGTGCTGTGGCTCTGGAAAAAGAAAGAAAGAATATTCTCAGGGTTGGACACTGACAGATGAACCTCTTTGTAAACTTTGTCAAACACCATGCCAGGGCATCAATGCAAAGACACCTGAATATTTTGAAGATCTTTTCTGTAATCTTGGCTGTTATGAAGAATACCGCGTTAGGATTAGTAGCACATCCCTCCGTCGGGAACTGTTTCAAATGGAGCATGGTGTCTGCTCAAATTGTCATTTGGACTGTCATAAGCTCGTAAAGCACATAAGACCATTGTCCGTGGAGATGCGGCGCGATTATATTGAGAAAGTAGCACCTAAGTTGGCAAGCCGGAAAAATTTGCTTGAAAAGATTGTTAATAATCCAACTGAGGGCAACGCGTGGCATGCTGACCACATTGTTCCTGTTTACCGAGGTGGAGGTGAATGCAGGCTAGAGAATATGAGGACCCTGTGTGTGGGATGTCATTTTGATGTTACCGCTGAGCAACGTGCTGAACGACGATTAGTTCGGCTCAAAGCTAAGAAGCAACTTAGAGACACTATCACTGATATCAAGAAAAGTGAAAATACTGAAAGGATAGATAACGACATTCAGAATCGAGTGCACGATGCGCAAGAGAATGTACTTGATGAACAGCTAATCTTAGTGAAGGTTCCTGGAAGTGCTTACTCCAAAGACGACTGCTTGGACAATAATACAGAGGGTCCCGAAGAGTCCACAGCAGCTTAG 3537 42.24 MDITEEQRKRAEANRLAAIAKRKALVESSNGQLQRQDPWKLFKCRKLSTELSAASAVQSSKRLSCNNTHLPERFRVRLEISSPDSFSITPEAVEGYSYPGEENCFRKLSDFLFNVTHSHYTQIIGGGKACVYKLRDYCPVLKCLKNSKDIDVYEIPWTTFNVVERLSHSFTLGRWMPCRPEHLSDEKVDELMQKLPDRLLNRLLPFQLDGVRFGLQRGGRCLIADEMGLGKTLQAIAIASCLMDEEGSMLVVCPAVLRFSWAEELERWLPFCLPSDIHLVFGHLDNPCHLSKFPKVVVISYTMLHRLCKSILQQKWSLLIVDESHHVRCAKKSSESEEIKAVLDLSTKVQHIILLSGTPSLSSSCAQLCIYCRPGLLGKTKYEFAKTYCDVKFVRTSQGKTFKDFSKGIRLDELNVLLKQTVMIRRLKEHVLVQLPPKRRQIIRLLLKSSDIVGAKAATREVINGDQDRNAAENNTDDILGEEEPDDGGACGTGKLSFHELGVAKLSGFREWFSIHPIISETDGLMDLDLKTDSQKMIIFAHHHKVLDGVQVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTKAVNIYIFCAKDTIDESHWRKLNKSLRRVTSTTDGKYDAIQEIAVERVSYLEACGRSGTSSESQMNSATCIKLSSKIARAQGHGSLEVEVNDELNGSFKVLVKDELNAKTDYPPDQNDDIDITTQTDQVAIKKRILLQLTIEVLKVLPVLHWKSKVEKRIKQRRMQEEKLCSGTSKVDNGEPHLITEPEKSSLNHVHVLRFEISQYTGRVHLYRCIPGIDLRPRPLFLNFRPEEVELIDCSVDDSEKTDFNLDATLYKLALQEFLSEWRKLRPIEQRKLYGKPLQLPLDIELCYLKESINHNADGVLKGKSLRRTTPIDDISRPLPSSAVWKLVQLCCGSGKRKKEYSQGWTLTDEPLCKLCQTPCQGINAKTPEYFEDLFCNLGCYEEYRVRISSTSLRRELFQMEHGVCSNCHLDCHKLVKHIRPLSVEMRRDYIEKVAPKLASRKNLLEKIVNNPTEGNAWHADHIVPVYRGGGECRLENMRTLCVGCHFDVTAEQRAERRLVRLKAKKQLRDTITDIKKSENTERIDNDIQNRVHDAQENVLDEQLILVKVPGSAYSKDDCLDNNTEGPEESTAA 1178
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 7351938 7367693 - Cp4.1LG18g07750.1 Cpe18g00774 485235

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe18g00774 1178 MobiDBLite consensus disorder prediction 465 488 - -
Cpe18g00774 1178 SMART helicmild6 490 597 IPR001650 -
Cpe18g00774 1178 MobiDBLite consensus disorder prediction 1159 1178 - -
Cpe18g00774 1178 Pfam SNF2-related domain 221 449 IPR000330 GO:0005524|GO:0140658
Cpe18g00774 1178 Pfam HNH endonuclease 1061 1092 IPR002711 GO:0003676|GO:0004519
Cpe18g00774 1178 CDD SF2_C_SNF 525 608 - -
Cpe18g00774 1178 Gene3D - 179 424 IPR038718 -
Cpe18g00774 1178 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 314 648 IPR027417 -
Cpe18g00774 1178 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 4 1116 - -
Cpe18g00774 1178 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 170 426 IPR027417 -
Cpe18g00774 1178 SMART ultradead3 199 382 IPR014001 -
Cpe18g00774 1178 CDD HNHc 1055 1095 IPR003615 -
Cpe18g00774 1178 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 4 1116 - -
Cpe18g00774 1178 Coils Coil 3 23 - -
Cpe18g00774 1178 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 212 360 IPR014001 -
Cpe18g00774 1178 Gene3D - 544 672 IPR027417 -
Cpe18g00774 1178 Gene3D - 986 1123 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe18g00774 K25861 ZRANB3; DNA annealing helicase and endonuclease ZRANB3 [EC:5.6.2.- 3.1.-.-] - csv:101216304 1914.43
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe08g00131 Cpe-Chr8:852899 Cpe18g00774 Cpe-Chr18:7351938 4.28E-57 dispersed
Cpe18g00774 Cpe-Chr18:7351938 Cpe01g00882 Cpe-Chr1:5177853 3.27E-26 dispersed
Cpe18g00774 Cpe-Chr18:7351938 Cpe05g00071 Cpe-Chr5:353314 1.97E-18 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g621 . . . . . . Bma06g00128 Bma12g00977 . . Cma10g00160 . Car10g00202 . . . . Bhi02g00275 . . . . . . . . . . . . . . . . . . . . . . Blo15g00326 . . Bpe07g00767 . . . . . . . . . . . Cpe18g00774 . . . . . . . . . . . . . . . . Chy02g02461 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010723 0 2 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50916 PF00176 SNF2_N 5.90E-24 CL0023 Cpe TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe18g00774 Cpe_Chr18 FPKM 0.913138 0.773038 7.297814 7.629639 7.06899 6.019408 7.007637 26.275692 27.007059 25.915007