Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe18g00775 ATGGATAAGGCAAAGGACGGCCATGGGGAGGTGCTTCTTCAAATGGCTCCAACAAAGCACTCATGGGGCCAATCCGAAGACACCCTCGAGTCCCTAGTCCATAGTTCACTGTTGAGGAAACGGACACGATCCAACCCAGAAGGCAAAGATGAAGCTTTTATGAGTGGGGCTTTTTTAGAATCTCATAGGAGCTTCAAAGCCAAAAATTCCATCGAAGACTTAGCTCCAGATGATGGCTCGTGGACATCACTGGCAGTTTATTTAGTTGTTTGTGGCGTTGAAATCAGGAGGACGAACATAACACGAAGAGGAAAACAAGTGGGAGCTGTTCAATTAGACGAACTCAGTCTGAGAGAACGAAGAGATCGGATAAACCAGAAGTTAAAAGATCTTCAAAAGTTGGTGCCAAATAGGAGTAAGACTGATAGAGCTTCACTTTTGGACGACACGATTCAATATTTGAAGCAACTTAAAGCACAAGTTCAGTTCATGTGCAGCATTAGATCAGATGTGCCACAGATGATCATACCTCTAGGAATGCAGCAGCAGCAGCTTCAAGTGTCACTGCTCGCAGCTCGTATGGGACTGCTTGACACTGCTTCAATGGCTCCCAGTTCCAGTTCCTTCCCTTGTGCTGCTGCATGTCCTCCGACTCTACTGCCTTCCATCATCTCATCAACAAAGCCAAAATCTAAACTTTCCACCTCTGCTTTCGTCCCTCCAACCGATCCTTTCTGCACTCTTCTGGCACAATCAATGGATATGGATTTGTACAGTAAAATGGTGACACTATATTGCCAAGAAGTGAACAGGACACCTCGGCAGGCAAGCAAATTAATGGAATCACAATGTGTAGAAGGGATCGAGGAGGATATGCATCAGAGCTAG 888 45.61 MDKAKDGHGEVLLQMAPTKHSWGQSEDTLESLVHSSLLRKRTRSNPEGKDEAFMSGAFLESHRSFKAKNSIEDLAPDDGSWTSLAVYLVVCGVEIRRTNITRRGKQVGAVQLDELSLRERRDRINQKLKDLQKLVPNRSKTDRASLLDDTIQYLKQLKAQVQFMCSIRSDVPQMIIPLGMQQQQLQVSLLAARMGLLDTASMAPSSSSFPCAAACPPTLLPSIISSTKPKSKLSTSAFVPPTDPFCTLLAQSMDMDLYSKMVTLYCQEVNRTPRQASKLMESQCVEGIEEDMHQS 295
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 7369554 7372778 + Cp4.1LG18g07650.1 Cpe18g00775 485236

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe18g00775 295 Gene3D - 114 165 IPR036638 GO:0046983
Cpe18g00775 295 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 118 185 IPR036638 GO:0046983
Cpe18g00775 295 Pfam Helix-loop-helix DNA-binding domain 118 158 IPR011598 GO:0046983
Cpe18g00775 295 PANTHER TRANSCRIPTION FACTOR PIF7 49 277 - -
Cpe18g00775 295 Coils Coil 114 134 - -
Cpe18g00775 295 SMART finulus 116 163 IPR011598 GO:0046983
Cpe18g00775 295 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 49 277 IPR031066 -
Cpe18g00775 295 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 108 157 IPR011598 GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe18g00775 - - - cpep:111779735 430.639
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe18g00775 Cpe-Chr18:7369554 Cpe12g00421 Cpe-Chr12:3164075 2.08E-18 dispersed
Cpe18g00775 Cpe-Chr18:7369554 Cpe02g01041 Cpe-Chr2:9612440 3.09E-08 wgd
Cpe18g00775 Cpe-Chr18:7369554 Cpe04g01477 Cpe-Chr4:11738496 2.95E-109 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g623 . . . Bda15g00616 . . . Bma12g00978 . . . . Car10g00201 . . . . . . . . . . . . . . . . . . . . . . Lsi02g00102 Csa01g00581 Chy12g01515 Cme12g01961 . Blo15g00325 . . Bpe07g00768 . . . . . . . . . . . Cpe18g00775 Bhi08g01118 . . . . . . Cla04g01172 Cam04g1229 Cec01g1740 Cco01g1786 Clacu04g1256 Cmu04g1235 Cre01g1530 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012476 0 1 0 0 0 1 1 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 2 2 0 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50917 PF00010 HLH 1.30E-07 No_clan Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe18g00775 Cpe_Chr18 FPKM 2.48686 1.897074 77.947212 77.803986 165.021286 192.768509 175.121719 25.701412 28.647461 23.885