Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe18g00778 TTCAAACTTTTGTTTGGTCTTGTGCGGGCGCTGCTGCTGCGTGCGCTTCTTCTCTTCTGCTTTCATGGCTTCTCTCTGAAAATTTCTCCAGCCCATTTGCCCAAGGAACACACACCAAAATTACAGTATAGTATGAAGGAGAAAGACACTGATAATCATTCATGGCGTCTTCCAATTATCACTTTCTTCATCTTAATCACAGGTACAATTGTCGAGGGACAAGAATTGCAGAGAGACAGAGAAGTTTTGTTACAGTTGAAATTCTTTTTAGAAAAACATAATCCCATTAAACGAGGAAAATATTCGTTTTGGAATTTGCAGAACTCGCCCTGTTCTTGGTCTGGAATATCCTGCAATCAAATCAATTCCCAAGTGACCGGAATTGACCTTTCAAATGAAGATATTTCCGGCACAATTTTTCATAATTTCTCTGCCTTTCCGGCGCTAACGGACCTCGACCTCTCTAGAAACACTTTCTCTGGTCTAATTCCCGGCGACTTGAACAACTGCAGAAATCTCCGGCGGTTGAATTTGTCGCACAACATCATCGATGACAAGTTGAACTTGTCGGGGTTGGTCAATATCGAGACTCTGGATTTGTCGGTCAACCGGATTTGGGGAGACATACGGTTGAATTTTCCGGGCATTTGCAGAAATTTGATGTTCTTTAATGTTTCCGGTAATAATCTCACTGGTCGGACGGATGACTGTTTTGACGAATGCCGGAATTTGCAGCATGTGGATTTGAGCTCCAACAGATTCAATGGTGGATTGTGGGGTGGGTTGGCGAGGACTCGTTTTTTCTCAGCGTCGGAGAATGAACTTTCCGGCGAGCTATCGCCGGCGATATTTACTGGGGTTTGTAATTTGGAGGTGTTGGACCTGTCAGAGAATAAATTTGCCGGCGGAGTTCCAGTGGAGGTTTCTAATTGTGGGAATTTGTCTTCTTTGAATCTATGGGGGAACCAATTTTCCGGGCAAATTCCGGCGGAAATCGGACGAATTTCGGGTTTGCAGAATTTATATCTGGGAAAGAACAATTTTTCCCGGGAAATTCCTGAATCGCTCTTAAGTTTGAACAACTTGGTGTTCCTCGATTTGAGCAAGAACAATTTCGGAGGGGACATTCAAGAAATCTTCGGGAGGTTTACACAGGTTCATTGCCTGTAG 1170 43.68 FKLLFGLVRALLLRALLLFCFHGFSLKISPAHLPKEHTPKLQYSMKEKDTDNHSWRLPIITFFILITGTIVEGQELQRDREVLLQLKFFLEKHNPIKRGKYSFWNLQNSPCSWSGISCNQINSQVTGIDLSNEDISGTIFHNFSAFPALTDLDLSRNTFSGLIPGDLNNCRNLRRLNLSHNIIDDKLNLSGLVNIETLDLSVNRIWGDIRLNFPGICRNLMFFNVSGNNLTGRTDDCFDECRNLQHVDLSSNRFNGGLWGGLARTRFFSASENELSGELSPAIFTGVCNLEVLDLSENKFAGGVPVEVSNCGNLSSLNLWGNQFSGQIPAEIGRISGLQNLYLGKNNFSREIPESLLSLNNLVFLDLSKNNFGGDIQEIFGRFTQVHCL 389
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 7379495 7383615 - Cp4.1LG18g07710.1 Cpe18g00778 485239

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe18g00778 389 Gene3D Ribonuclease Inhibitor 259 389 IPR032675 -
Cpe18g00778 389 SUPERFAMILY L domain-like 98 387 - -
Cpe18g00778 389 Pfam Leucine rich repeat N-terminal domain 77 119 IPR013210 -
Cpe18g00778 389 Gene3D Ribonuclease Inhibitor 75 258 IPR032675 -
Cpe18g00778 389 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 59 389 - -
Cpe18g00778 389 ProSiteProfiles Leucine-rich repeat profile. 172 193 IPR001611 GO:0005515
Cpe18g00778 389 Pfam Leucine rich repeat 194 254 IPR001611 GO:0005515
Cpe18g00778 389 Pfam Leucine rich repeat 126 181 IPR001611 GO:0005515
Cpe18g00778 389 PANTHER LEUCINE-RICH REPEAT TRANSMEMBRANE PROTEIN KINASE FAMILY PROTEIN-RELATED 59 389 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe18g00778 - - - cmax:111484984 659.833
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe18g00778 Cpe-Chr18:7379495 Cpe13g00719 Cpe-Chr13:6640505 5.01E-12 dispersed
Cpe18g00778 Cpe-Chr18:7379495 Cpe01g02151 Cpe-Chr1:18099141 3.26E-15 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g601 . . . Bda15g00614 Bpe12g00532 . . . . . Cma10g00211 . Car10g00198 . . . . Bhi02g00285 . . . . . . Cla06g01566 . . . . . . Cone2ag0823 . Cone13ag0052 . . . . . . . . . . . . . . . . . . . . . Cpe18g00778 . . . . . . . . . . . . . . Lsi06g01441 Csa01g00264 Chy02g02469 Cme02g01857
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007471 1 1 1 0 1 1 1 1 1 1 1 1 1 1 0 1 1 2 1 1 1 2 1 2 2 1 2 3 2 0 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe18g00778 Cpe_Chr18 FPKM 21.898096 26.558279 25.327293 25.970549 36.834827 37.096409 37.758163 26.841541 26.145294 26.369747