Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe18g00787 ATGGCGTTTCTTGGATTAGTCTTGGTGGGTCTTCTTCTATCTTTGGGATGTGATTCTGTTCATGGCAACAATGGAGGAGGAGGTTGGACTAATGCCCACGCCACGTTCTACGGTGGGGGCGACGCTGCTGGTACAATGGGAGGGGCTTGTGGGTATGGAAACCTATACAGCCAGGGATATGGGACGAACACAGCAGCTCTGAGCACAGCCCTATTCAACAATGGACTGAGCTGTGGGGCTTGCTTCGAAATCAAGTGCGTAAATGACGCAAGATGGTGTCTTTCAAGCTCCATTGTGGTCACTGCCACCAACTTTTGTCCACCAAACAATGCGCTCCCCAACAACGCCGGTGGCTGGTGTAACCCTCCCCAGCACCATTTCGATCTCTCCCAGCCCGTCTTCCAGCAAATCGCCCATTACAAAGCCGGCATTGTCCCAGTGGCATACAGAAGAGGGAGTTTGTGGGTTTGGGTTAGGGTGCATGACATCTCAAGGCCACAAATGCATTTGTTTCAAGCTCCCATGAAATCC 531 51.98 MAFLGLVLVGLLLSLGCDSVHGNNGGGGWTNAHATFYGGGDAAGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEIKCVNDARWCLSSSIVVTATNFCPPNNALPNNAGGWCNPPQHHFDLSQPVFQQIAHYKAGIVPVAYRRGSLWVWVRVHDISRPQMHLFQAPMKS 177
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 7441911 7443965 + Cp4.1LG18g07880.1 Cpe18g00787 485248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe18g00787 177 SMART dpbb_1 64 149 IPR007112 -
Cpe18g00787 177 Pfam Lytic transglycolase 64 149 IPR009009 -
Cpe18g00787 177 PRINTS Expansin signature 86 97 IPR002963 GO:0009664
Cpe18g00787 177 PRINTS Expansin signature 98 108 IPR002963 GO:0009664
Cpe18g00787 177 PRINTS Expansin signature 117 134 IPR002963 GO:0009664
Cpe18g00787 177 PRINTS Expansin signature 134 147 IPR002963 GO:0009664
Cpe18g00787 177 PRINTS Expansin signature 59 73 IPR002963 GO:0009664
Cpe18g00787 177 PRINTS Expansin/Lol pI family signature 28 43 IPR007118 GO:0005576
Cpe18g00787 177 PRINTS Expansin/Lol pI family signature 46 64 IPR007118 GO:0005576
Cpe18g00787 177 PRINTS Expansin/Lol pI family signature 68 86 IPR007118 GO:0005576
Cpe18g00787 177 PRINTS Expansin/Lol pI family signature 142 158 IPR007118 GO:0005576
Cpe18g00787 177 PANTHER EXPANSIN 17 151 - -
Cpe18g00787 177 SUPERFAMILY Barwin-like endoglucanases 28 153 IPR036908 -
Cpe18g00787 177 Gene3D - 16 152 IPR036908 -
Cpe18g00787 177 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 47 151 IPR007112 -
Cpe18g00787 177 PANTHER EXPANSIN-A15 17 151 IPR002963 GO:0009664
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe18g00787 Cpe-Chr18:7441911 Cpe02g01346 Cpe-Chr2:11913145 7.71E-74 dispersed
Cpe01g01474 Cpe-Chr1:8805796 Cpe18g00787 Cpe-Chr18:7441911 2.52E-77 wgd
Cpe13g00956 Cpe-Chr13:8016994 Cpe18g00787 Cpe-Chr18:7441911 1.99E-68 wgd
Cpe18g00787 Cpe-Chr18:7441911 Cpe04g01494 Cpe-Chr4:11841897 1.13E-86 wgd
Cpe18g00787 Cpe-Chr18:7441911 Cpe09g00189 Cpe-Chr9:1092462 4.56E-75 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe18g00787 - - csv:101222936 268.085