Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe18g00788 ATGGCCACCGTCACTACTCAAGCTTCCGCCGCTGTTTTCCGGCCATGCGCCGCCCGATCGAGATTCCTTACTGGTTCTTCCGGCAAACTCCACCGTATGCTGTCGGTTAAACCAGTCGCTGCTTCGTCTTCTTCATCTTTCAAGGTTGAAGCCAAGAAGGGAGAGTGGTTGCCTGGTCTGCCATCTCCGGCATACTTAAATGGCAGTCTTCCAGGGGACAATGGATTTGACCCACTGTCTCTAGCCGAGGACCCAGAGAACTTGAGGTGGTTCGTGCAGGCGGAGCTGGTGAACGGCCGGTGGGCTATGCTGGGTGTCGCCGGAATGCTTCTGCCGGAGGTTTTCACGAAGATCGGAATCATCAACGCTCCTCAATGGTACGACGCCGGAAAAGCAGAGTACTTCGCATCGTCTTCGACTCTGTTCGTGATCGAGTTCATCCTTTTCCATTACGTGGAAATCCGAAGGTGGCAGGACATCAAGAACCCCGGCAGCGTGAACCAAGACCCCATCTTCAAGCAATACAGTTTGCCGCCAAATGAAGTCGGTTACCCCGGTGGGATTTTCAACCCCCTCAATTTCGCTCCCACTCAGGAAGCCAAAGAGAAGGAACTAGCCAATGGGAGGCTTGCGATGTTGGCGTTTTTGGGGTTCATTGTGCAACACAACGTGACAGGGAAGGGGCCGTTTGAGAACCTTTTGCAGCACATTTCTGACCCATGGCACAACACCATTGTGCAGACGTTCAGTGGCAACTAG 759 53.62 MATVTTQASAAVFRPCAARSRFLTGSSGKLHRMLSVKPVAASSSSSFKVEAKKGEWLPGLPSPAYLNGSLPGDNGFDPLSLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTQEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHNTIVQTFSGN 252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 7444269 7445828 + Cp4.1LG18g07870.1 Cpe18g00788 485249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe18g00788 252 Gene3D Chlorophyll a/b binding protein domain 63 242 - -
Cpe18g00788 252 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 252 IPR001344 GO:0009765|GO:0016020
Cpe18g00788 252 PANTHER CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC 1 252 - -
Cpe18g00788 252 Pfam Chlorophyll A-B binding protein 63 222 IPR022796 -
Cpe18g00788 252 SUPERFAMILY Chlorophyll a-b binding protein 53 249 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe04g01495 Cpe18g00788 CCT
Cpe04g01495 Cpe18g00788 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g02245 Cpe-Chr1:19081239 Cpe18g00788 Cpe-Chr18:7444269 7.47E-51 dispersed
Cpe04g01009 Cpe-Chr4:9034391 Cpe18g00788 Cpe-Chr18:7444269 6.18E-65 dispersed
Cpe07g00484 Cpe-Chr7:3138252 Cpe18g00788 Cpe-Chr18:7444269 7.16E-67 dispersed
Cpe09g00591 Cpe-Chr9:4104797 Cpe18g00788 Cpe-Chr18:7444269 4.70E-68 dispersed
Cpe13g00808 Cpe-Chr13:7233422 Cpe18g00788 Cpe-Chr18:7444269 3.60E-49 dispersed
Cpe18g00215 Cpe-Chr18:3779146 Cpe18g00788 Cpe-Chr18:7444269 1.19E-49 dispersed
Cpe18g00788 Cpe-Chr18:7444269 Cpe02g01055 Cpe-Chr2:9696111 1.70E-166 wgd
Cpe18g00788 Cpe-Chr18:7444269 Cpe04g01495 Cpe-Chr4:11844811 3.85E-179 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe18g00788 K08910 - csv:101222701 480.33