Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe18g00789 ATGCTGGAAATTAAGGACCCTGCGATTAAGATTTTCGGCAAGGAGATTCAACTTCCGGCCGACTGTGAAGTTCCGTTGATCGAAAGTGACGATTCGGATTCTAGTTCTCAGAAAGAAAATCGAGATGAGGCAGTAGAAAAGGATGTAGGAAAAGCCACTGAGAATTCAGCTTCAAAAGAAGAAACTCTACATGATTCGGAGGATTCTGCATGTGTACAAACGGCCAATGAGGCACACATGAATCCTGAAGTGCTATCAATGGATGAGAATGACAAACCAGAGAAGGAACAAAATGACGCACCCAACTCAAAAGAGAAATTGAAGAAGCCAGACAAAATACTTCCATGTCCCCGCTGCAATAGCATGGAAACCAAGTTTTGTTATTACAATAATTATAATGTCAACCAGCCACGCCATTTTTGCAAAGCCTGTCAAAGATATTGGACTGAAGGCGGTAATAGGAGAAATGTCCCTGTTGGAGCTGGCCGCCGAAAGAACAAGAACTCTGCCTCACATTACCGTCATATTACAATCTCAGAGGCTCTTCAAGCTGCACAAATGGATATTCCCAATGGGGTCAACCACCTACCATCCAAAAGCAATGGCCGAGTCCTCAATTTTAGTGCAAACACATCTGTGTGTGAATCTATGGCCACTGTCCTCAATCCTCCGGAAAGAAAGGTCTTGAATGGGACTAGGAATGAATTTCATAGACTCGAAGACCAAGGAATTAAAGCACCTTGTAAGGGTGGGGAAACTGGCGATGATTGTTCCAGTGCATCTTCAGTGACTGTGTCAAGTTCAACGGAGGAAGGAGCTAGGAGGTGCCCTCAAGAACCACAGATGCAGAACATCAATGGTTTCCCTCAAATCCCATATCTTCCCGGTGTTCCTTGGCCTTGTACATGGAATGCACCACTACCTCCACCGGCTTTCTGCCCTCCTGGAGTTCCTTTATCATTCTATCCTGCGACATACTGGAGCTGTAGCGTTCCAGGTGCTTGGAATGTACCTTGGTTCTCTCCACATCCCTGTTCTCCAAACTCTGGTCCAATTTCTCCTATACTAGGGAAGCATTCCAGAGATGGTGACAAACTCCAGGCTGATAATTCTGGGAGGGAAGAACCTCCAAAACAGAAAAATGGATCTGTTTTGGTTCCCAAAACTTTAAGGATTGATGATCCAAATGAAGCCGCTAAGAGTTCGATATGGGAGACACTTGGTATTAAGAATGATTCAACCAAAGCTGTTAATCTGTCTAAGATCTTCCAATCAAAGGGTGGTCAAAAGAATAGTGTATCTGAAGTGTTATCATCTCCTGTTTTGCAAGCCAACCCTGCAGCGTTCTCAAGATCTCTTACTTTCCGTGAACATTCGTGA 1380 44.35 MLEIKDPAIKIFGKEIQLPADCEVPLIESDDSDSSSQKENRDEAVEKDVGKATENSASKEETLHDSEDSACVQTANEAHMNPEVLSMDENDKPEKEQNDAPNSKEKLKKPDKILPCPRCNSMETKFCYYNNYNVNQPRHFCKACQRYWTEGGNRRNVPVGAGRRKNKNSASHYRHITISEALQAAQMDIPNGVNHLPSKSNGRVLNFSANTSVCESMATVLNPPERKVLNGTRNEFHRLEDQGIKAPCKGGETGDDCSSASSVTVSSSTEEGARRCPQEPQMQNINGFPQIPYLPGVPWPCTWNAPLPPPAFCPPGVPLSFYPATYWSCSVPGAWNVPWFSPHPCSPNSGPISPILGKHSRDGDKLQADNSGREEPPKQKNGSVLVPKTLRIDDPNEAAKSSIWETLGIKNDSTKAVNLSKIFQSKGGQKNSVSEVLSSPVLQANPAAFSRSLTFREHS 459
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 7448845 7451853 - Cp4.1LG18g07900.1 Cpe18g00789 485250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe18g00789 459 MobiDBLite consensus disorder prediction 351 384 - -
Cpe18g00789 459 ProSiteProfiles Zinc finger Dof-type profile. 114 168 IPR003851 GO:0003677|GO:0006355
Cpe18g00789 459 PANTHER CYCLIC DOF FACTOR 2 1 458 IPR045174 GO:0003700|GO:0006355
Cpe18g00789 459 MobiDBLite consensus disorder prediction 84 112 - -
Cpe18g00789 459 Pfam Dof domain, zinc finger 111 168 IPR003851 GO:0003677|GO:0006355
Cpe18g00789 459 MobiDBLite consensus disorder prediction 358 376 - -
Cpe18g00789 459 MobiDBLite consensus disorder prediction 20 112 - -
Cpe18g00789 459 MobiDBLite consensus disorder prediction 255 282 - -
Cpe18g00789 459 MobiDBLite consensus disorder prediction 250 282 - -
Cpe18g00789 459 ProSitePatterns Zinc finger Dof-type signature. 116 152 IPR003851 GO:0003677|GO:0006355
Cpe18g00789 459 MobiDBLite consensus disorder prediction 32 67 - -
Cpe18g00789 459 PANTHER CYCLIC DOF FACTOR 1 1 458 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe04g01497 Cpe18g00789 CCT
Cpe18g00789 Cpe20g00016 CCT
Cpe18g00789 Cpe20g00016 ECH
Cpe04g01497 Cpe18g00789 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00506 Cpe-Chr3:2973260 Cpe18g00789 Cpe-Chr18:7448845 1.30E-74 dispersed
Cpe04g00052 Cpe-Chr4:505147 Cpe18g00789 Cpe-Chr18:7448845 2.32E-117 dispersed
Cpe08g00683 Cpe-Chr8:5134313 Cpe18g00789 Cpe-Chr18:7448845 1.65E-55 dispersed
Cpe01g01472 Cpe-Chr1:8794573 Cpe18g00789 Cpe-Chr18:7448845 6.51E-54 wgd
Cpe18g00789 Cpe-Chr18:7448845 Cpe02g01058 Cpe-Chr2:9712224 1.86E-136 wgd
Cpe18g00789 Cpe-Chr18:7448845 Cpe20g00016 Cpe-Chr20:95532 5.32E-113 wgd
Cpe18g00789 Cpe-Chr18:7448845 Cpe04g01497 Cpe-Chr4:11852184 0 wgd
Cpe18g00789 Cpe-Chr18:7448845 Cpe09g00184 Cpe-Chr9:1063668 1.12E-67 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50919 PF02701 zf-Dof 1.50E-30 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe18g00789 - - csv:101222224 790.415