Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe18g00790 ATGAACTCCTCTGCACCATCACTCTGTTTCCTGCTATTCACCCTCTTAGCAGCCGCCGCCATTCCCAGCTGCCACTCCAAGATGGTGCAGTTCATATTCGGCGACTCACTCTCCGACGTTGGAAATAATATGTACCTTTCAAGGAGCTTAGCTCAGGCAAACCTGCCCTGGTACGGCATTGATTTTGGCAATGGACTCCCTAATGGAAGGTTCAGCAATGGCCGCACTGTTGCAGACATTATCGGTGATGAAATGGGTCTACCCAGACCACCGGCTTTTCTCGATCCCTCGCTAAGTGAAGATGTAATTCTGGAAAATGGAGTGAATTACGCATCTGGGGGTGGAGGAATCTTGAACGAAACTGGCGGCTACTTCATTCAGCGGTTTGGTCTGTACAAACAAATTCAGCTCTTTCGAGGGACGCAAGAACTGATCAAAGCCAAAATCGGGGAAGAAAAAGCCAAGGAGTTCTTCGAAGAAGCTCGATACGTGGTTGCTTTGGGAAGCAACGATTTCATTAACAATTATCTCATGCCCGTTTACTCCGATTCTTGGAAATACAACGATCAAACATTCATCACTTACTTGATGGAAACCCTTCGCGATCAGCTCAAGTTGTTATACAGTTTGGGGGCAAGGCAATTGATGGCGTTTGGGCTGGGTCCAATGGGCTGCATTCCGCTGCAAAGGGTACTCAGTTCATCCGGCGATTGCCAAGACAGAACCAACAATTTGGCCCTCAGCTTCAACAAAGCTGCCAGTAGCCTTCTTGATGGCCTCGCCACCAGGCTTCCAAATGCCACCTACAAATTCGGAGATGCTTATGATGTTGTCGCCGACGTTATTAGCAACCCCGGCAAATATGGGTTTAGTAACTCGGAATCGCCATGTTGCTCATTTGGGAGGATCCGGCCGGCCCTTACATGCATTCCGGCGTCGGTGCTGTGCAAAGATAGAAGCAAATATGTGTTTTGGGATGAGTATCACCCTTCGGACAAGGCTAACGAGTTGATTGCTAATGAACTCATTAAGAAATTTGGGTTTTCAAGAGTTAATCAAAACGGAGCTCCATCTCCAGCCCCTGAAGCTGAGGCGGATCCAGCCCCAGCTCCGGCCGCGGATCCATCTCCTTCTCCATTCATATCTCCATCCCCACAGTGA 1161 48.92 MNSSAPSLCFLLFTLLAAAAIPSCHSKMVQFIFGDSLSDVGNNMYLSRSLAQANLPWYGIDFGNGLPNGRFSNGRTVADIIGDEMGLPRPPAFLDPSLSEDVILENGVNYASGGGGILNETGGYFIQRFGLYKQIQLFRGTQELIKAKIGEEKAKEFFEEARYVVALGSNDFINNYLMPVYSDSWKYNDQTFITYLMETLRDQLKLLYSLGARQLMAFGLGPMGCIPLQRVLSSSGDCQDRTNNLALSFNKAASSLLDGLATRLPNATYKFGDAYDVVADVISNPGKYGFSNSESPCCSFGRIRPALTCIPASVLCKDRSKYVFWDEYHPSDKANELIANELIKKFGFSRVNQNGAPSPAPEAEADPAPAPAADPSPSPFISPSPQ 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 7453350 7455274 - Cp4.1LG18g07950.1 Cpe18g00790 485251

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe18g00790 386 PANTHER GDSL LIPASE/ACYLHYDROLASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_4G14700) 11 356 - -
Cpe18g00790 386 MobiDBLite consensus disorder prediction 353 386 - -
Cpe18g00790 386 Gene3D SGNH hydrolase 27 346 IPR036514 -
Cpe18g00790 386 CDD SGNH_plant_lipase_like 31 345 IPR035669 -
Cpe18g00790 386 MobiDBLite consensus disorder prediction 362 386 - -
Cpe18g00790 386 Pfam GDSL-like Lipase/Acylhydrolase 31 341 IPR001087 GO:0016788
Cpe18g00790 386 SUPERFAMILY SGNH hydrolase 161 345 - -
Cpe18g00790 386 PANTHER OS06G0229400 PROTEIN 11 356 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe18g00790 - - - cmo:103493995 643.269
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00716 Cpe-Chr3:4337310 Cpe18g00790 Cpe-Chr18:7453350 3.24E-81 dispersed
Cpe16g00023 Cpe-Chr16:279089 Cpe18g00790 Cpe-Chr18:7453350 1.69E-78 dispersed
Cpe18g00790 Cpe-Chr18:7453350 Cpe07g00820 Cpe-Chr7:7420542 1.10E-65 dispersed
Cpe18g00790 Cpe-Chr18:7453350 Cpe20g00486 Cpe-Chr20:2816016 9.26E-63 transposed
Cpe18g00790 Cpe-Chr18:7453350 Cpe10g00121 Cpe-Chr10:782840 2.17E-62 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g560 . . . Bda15g00606 Bpe12g00544 . . . . . Cma10g00195 . Car10g00185 . Sed08g0218 . . Bhi02g00312 Tan09g2118 Cmetu06g2001 . Hepe09g0115 . . Cla06g01589 Cam06g1758 Cec06g1814 Cco06g1817 Clacu06g1724 Cmu06g1667 Cre06g2481 . . Cone13ag0068 Cone19ag0069 . . . . Blo13g00006 . . . . . . Bma08g00223 . Cmo10g00210 . . . . . . Cpe18g00790 . . . . . . . . . . . . . . Lsi06g01461 Csa01g00238 Chy02g02494 Cme02g01880
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010973 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe18g00790 Cpe_Chr18 FPKM 329.023407 310.102081 289.299866 270.604431 404.142792 473.922791 397.354767 395.201385 410.132141 353.183563