Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe18g00794 ACCGACAATTATTCTGCGTTGGATTGGAACTGCAATTTTGGGTTTCCGGACAGCTTTTTTGACGTTGTTCCTTTGCTTGAGAGTTGCACAAATAATGACTCGTTTTTCGACCCCAAGGACATAGATCCTATTAGCAGTTTTATATCAGAAGATGGGGGCGTTGGGATTTGGAGTGAATTGGAGAGTGAAGCATTTGGGGTTGAGGAAGGAGGCGGAGAAAATGGTAATGGAGGGATGGGAAACGAGGGGACGATGATGAGGAAGGCCAAAAGAAAGTGCTGCAGAGAAACGAGCAATGGCAGTGGCAGTGGCAGTGCATCAACAAAAACGTTGTCAAGAGAAGCAATATCGGAGTACTTCTACATGCCCATAACTCAGGCGGCAAAACAGCTCAATGTCGGACTCACTCTGTTGAAGAAGAGATGCAGAGAATTGGATGGAGATCAGGGAGTGAATAAATTGAGCAATGTATTGAAGATATTAGAGAATGAGAAGAAATTAATGGAGGAGAGACCAGATTTGCAGTTGGAGGACAATACAAAGAGGCTTAGACAAGCCTGCTTCAAGGCCAACTACAAGAAAAGAAAGCTTTCTGGAACCAACAATGGCTCCCAGTATTTCTCCATTAATGGTGGAATGATTTGCAGAGATGATCAAGAACAGGGGGAGGAGGAGGAGGACGACGACGAAGACGATGAAGAAATAAAATATCTGTTGATGGGTTGCTCGTTTTCGTCGAGTATTGGCAGCCCATTGATG 759 44.53 TDNYSALDWNCNFGFPDSFFDVVPLLESCTNNDSFFDPKDIDPISSFISEDGGVGIWSELESEAFGVEEGGGENGNGGMGNEGTMMRKAKRKCCRETSNGSGSGSASTKTLSREAISEYFYMPITQAAKQLNVGLTLLKKRCRELDGDQGVNKLSNVLKILENEKKLMEERPDLQLEDNTKRLRQACFKANYKKRKLSGTNNGSQYFSINGGMICRDDQEQGEEEEDDDEDDEEIKYLLMGCSFSSSIGSPLM 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 7463360 7464581 - Cp4.1LG18g07970.1 Cpe18g00794 485255

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe18g00794 253 PANTHER PROTEIN RKD1-RELATED 72 145 - -
Cpe18g00794 253 PANTHER PROTEIN RKD4 72 145 IPR044607 GO:0003700
Cpe18g00794 253 PANTHER PROTEIN RKD4 150 202 IPR044607 GO:0003700
Cpe18g00794 253 Coils Coil 151 171 - -
Cpe18g00794 253 PANTHER PROTEIN RKD1-RELATED 150 202 - -
Cpe18g00794 253 Pfam RWP-RK domain 111 145 IPR003035 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe18g00794 - - - cmax:111471365 213.772
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g00019 Cpe-Chr9:114286 Cpe18g00794 Cpe-Chr18:7463360 5.01E-23 dispersed
Cpe18g00794 Cpe-Chr18:7463360 Cpe04g01500 Cpe-Chr4:11863618 1.93E-66 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g557 . . . Bda15g00603 Bpe12g00547 . . . . . Cma10g00191 Cma11g00143 Car10g00182 Car11g00151 . . . Bhi02g00318 . . . . . . Cla06g01591 . . . . . . Cone2ag0843 . . . . . . . Blo13g00009 . . . . . . Bma08g00221 . Cmo10g00208 Cmo11g00166 . . . . . Cpe18g00794 . . . . . . . . . . . . . . Lsi06g01463 Csa01g00234 Chy02g02498 Cme02g01884
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002327 1 2 1 3 2 2 3 2 2 4 1 2 2 4 2 2 2 2 2 2 1 2 2 2 2 1 2 3 2 2 62
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50920 PF02042 RWP-RK 3.20E-11 No_clan Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe18g00794 Cpe_Chr18 FPKM 144.959747 151.454391 69.290199 66.790398 132.721222 145.486389 133.397751 81.136116 80.997101 78.268616