Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe18g00810 GAGAGAGAGAAGACTTTGGGAGGGAGATTCCTTCATAAACCTCCCCCATTCACCCCCTCCCCTCCTTCCGGATGCCAAATCTCTCTTCCTCTTCTTTCATGGGCGTCGGATTCCCCCTCCGACCTACCGGACCTTTATCTTCCTTGCATGGACGGCGCCACCGCCGCCTCTCTTGATCGCTCCTCCCACGCAAATCAATATCATGAAACGCCGGAAGCGCCCGAGGATTTCTACTCCGATTCCGGACTCTCACATCTTCCGCTGGCCGAGGCTCCGGTTCTAGTGCTTATTAAATTCCACACAGCGCTGCGATCCGAGCTTGCGGATTTACGGCGCGTGACGTTGGCCGCGGCGGAGAGTGGGTGTTATGGCCGGGAGTTCGTGTCGGAGTTGATCCGGAGAGTTGAGTTTCTGAAACTTGCTTATAAGTATCATTGCGCCGCCGAGGATGAGCATGAAAGCTTAGATGGCCTCTTCGCCTCCATTTCTGAACACTGTGAAGAAATCAATGCAGAGAACAAAGATATCTCCAAGCCATTTCAGGAACTGGTTTTCTGTTTGGGCACAATTCAAACCACCATTTGCCAGCATATGATCAAAGAAGAACAACAGGTTTTTCCGTTGCTGATGAAACAGTTCTCTGCAAGAGAACAGGCGTCACTTGTGTGGCAATTCATTTGCAGTGTGCCGATGATACTATTGGAGGAGCTTCTGCCATGGATGATGTCTTTTCTTCCATCGGAGCAACAATCGGAAGTCGTAATCTGCCTACGAGATGTAGTGCCGAACGAGAAACTTCTGCAAGAGGTGATAATGTCTTGGCTTGGCAACAGTGAGGCGCCTTGTAGAGATGTAGAAGCAGAAGTTATGAAGGTGCATTCATCTCAGGACAGTGGACAGAGCCCCGTCGATAGCCTCCACCTCTGGCATGGTGCCATTATGAAGGATCTGAAGGAAGTTCTAAAATGTCTATTCCAACTCAAGAGCTGCTCGTCAACAGCTCTTTCTAATCTTGATTCCTTGGTTGTCCAAATAAGGTTCCTGGCTGATGTAATTCTTTTTTATCGAAAGGCATTGGAGAAATTCTTTCGTCCAGTGTTCAATCAATATTCCGACGCATACCTAATCTCCTCCGACCAGGCATTTCTTAGTGATAGTCATATTGAAGCCTTACAACGGCTGCTGCAGCATGGTGCCCACGACACTATACCTTTGAGCAGCTTTTTGGAAAAATTGTGCTGGGACATGGAGTCGTTTGTTGTACGAGTTAGCAAACAGTTCATTTTTCAAGAAACGAAGGTGCTTCCAGTGATTAGAAGGAGCTGCAGCCATAAAATACAGCAACAGCTTCTGTATATGAGCCTCCGCACCTTGCCACTTGGGCTCTTGAAGTGTATTGTTGGTTGGTTTTCAACTCACTTATCTGAGGAAGAAATGAGATCTGTACTTCACACCAAATCGAAGGGAGATCTTCGGGTCAACAATGCGCTTGTTGCCCTCTTACATGAGTGGTTACGAATTGGCTACTCGGGCAAAACTTCGGTCGAACAATTTGGACAAGAATTGCAGAAAATTTTTCAAACCAGAAGCTATTTGTTGCATGGACAGGTGGATCAAACGAAGGGAGTTGTTGGAACTTTATCCTTGAGCTCAAATGTTCAATCTCATAAGGGCTCAAACTCTGAGGAAATTGGATTACTTTCCAACAACAAGAACAAGGGTTTCATGTCGCATTCTTCACCTGATGGTTCTTGCACTGCTTCAGTGTATGGAACATCTTATTCTAGTGGAATCAATCTGCAGATACATTTTCCAGGAACAGTGAAGGTGCCATGTCCTTACACTAAACATCTTTATGAGGAACGACCACATTCTGCTTCTAATCAGCCAAAACCAATAGACCTCATTTTCTTCTTCCACAAAGCTCTCAAGAAAGAATTGGATTACTTTGTTCTTGGTTCGGCTAAGATGGTTGAAAATGTTGGGATCTTGACAGAGTTTATCAGGCGGTTCCAATTGGTAAAATATTTATACCAAATCCATACGGATGCTGAGGACCAGATTGCTTTTCCAGCATTGGAGAAGAAGGGAAAGTTCCAAAATATTAGCTACTCCTACTCCATTGATCATAAACTTGAAGTACACCAATTCAGTACAATATCCCTCATTCTTAATGAAATGTCTGAATTGCACGCTTCGATTTTTTATGGCAATACTGATAGGAAAATGTTTGGTCACCGGCAGCTCTGTCTGGAACTCCATGATATGTGCCAATCGCTGCACAAGTCGCTCTCTGACCATGTTGATCGTGAAGAAATTGAGCTTTGGCCCTTGTTCAGAGAATTCTTCTCAATCGAAGAGCAAGAAAAGCTCATTGGAGCAATATTTGGCAGAACAAAAGCTGAAATATTGCAAGATATGATACCTTGGCAAATGGCATATTTAACACCTTCTGATCAACATGACATGATGTCTATGTTCCACAAGGTTACAAGGAATACAATGTTCAATGAATGGTTAAGAGAGTGGTGGGAAGGTTATGACCATGAGAGAGTGACAGCTGAGGTGGCAACTACTACTCCCTCATTGACTTCAGATCCCTTGGAAATCATCTCAAAATATCTTTCCACGGAAGTAACTGATGTATGTGAAGGAAATGTTTTTGGAAAACCCATCACCTCAGAACAGAATGAAGGTCAATGGCATGCAACCGATGTCGAGAAGGCGGTAATATTCAACTTGAATGATGAAACAAAAGATTTTGATGGCAGCCAACGTAACAAAACATTTGAAGAATGCACAAAACTTGTTTCTCATGGGGATGTTGATAGGGATGCTGATGTTATCACAGAACATATGATCGATACAGAACGACCTGAAGAACATGAGAAATCAATCCAACATGACCACCTTCTTACAATTAGTCAAGAAGATCTGGAAGCAGCAATAAGAAGGGTCTCGAGAGACTCATCCTTAGACCCCAAAACTAAATCCTATATGATACAGAATTTGCTAATGAGCCGTTGGAATGCCAAGCACCATACCCAATTAGAGACGAACGTTACAACGGAAAGCCAAGGATTTGCAGGTCAGTATCCATCCTATAAGGATTCTTTGAAGAAAGAATTTGGTTGCAAACATTACAAAAGAAACTGCAAGCTTCTAGCTCCATGTTGCAACCAACTACACACATGCATACATTGTCATGATGAGACAACCGATCACTCGTTGGATAGAAAATCCATCACAAAGATGATGTGCATGAACTGCTTGGTAGTTCAGCCTATTGGCAAGACATGTTCAACCGTCTCTTGTGGCAATTTGTCAATGGGAAAATATTTCTGCAAGATCTGCAAACTATTTGACGATTCTAGAGATATCTACCATTGTCCATACTGCAACCTGTGCCGAGTGGGAAAGGGATTGGGGATTGACTACTTCCATTGCATGAACTGCAATGCCTGCATGTCCCGTGCACTCTCAGTTCATGTTTGCAGAGAGAAGTGCCTTGAAGACAACTGCCCTATTTGCCACGAATACATCTTCACTTCCACCCTTCCAGTCAAGTCCCTCCCATGTGGCCATTTGATGCATTCAGCATGTTTTCAGGAATACACCTACACACATTATACCTGCCCTATCTGTAGCAAGTCACTGGGAGACATGCAGGTGTACTTTGAGATGCTGGATGCATTGTTGGCTGAAGAGAAAATTCCAGATGAGTATTCTGGGAAAACTCAGGTCATACTGTGCAATGACTGTGAGAAGCGTGGAATGGCAGCATTCCACTGGTTGTACCATAAATGTCCCTTCTGCGGTTCATATAATACTAGGGTATTGTAA 3843 43.87 EREKTLGGRFLHKPPPFTPSPPSGCQISLPLLSWASDSPSDLPDLYLPCMDGATAASLDRSSHANQYHETPEAPEDFYSDSGLSHLPLAEAPVLVLIKFHTALRSELADLRRVTLAAAESGCYGREFVSELIRRVEFLKLAYKYHCAAEDEHESLDGLFASISEHCEEINAENKDISKPFQELVFCLGTIQTTICQHMIKEEQQVFPLLMKQFSAREQASLVWQFICSVPMILLEELLPWMMSFLPSEQQSEVVICLRDVVPNEKLLQEVIMSWLGNSEAPCRDVEAEVMKVHSSQDSGQSPVDSLHLWHGAIMKDLKEVLKCLFQLKSCSSTALSNLDSLVVQIRFLADVILFYRKALEKFFRPVFNQYSDAYLISSDQAFLSDSHIEALQRLLQHGAHDTIPLSSFLEKLCWDMESFVVRVSKQFIFQETKVLPVIRRSCSHKIQQQLLYMSLRTLPLGLLKCIVGWFSTHLSEEEMRSVLHTKSKGDLRVNNALVALLHEWLRIGYSGKTSVEQFGQELQKIFQTRSYLLHGQVDQTKGVVGTLSLSSNVQSHKGSNSEEIGLLSNNKNKGFMSHSSPDGSCTASVYGTSYSSGINLQIHFPGTVKVPCPYTKHLYEERPHSASNQPKPIDLIFFFHKALKKELDYFVLGSAKMVENVGILTEFIRRFQLVKYLYQIHTDAEDQIAFPALEKKGKFQNISYSYSIDHKLEVHQFSTISLILNEMSELHASIFYGNTDRKMFGHRQLCLELHDMCQSLHKSLSDHVDREEIELWPLFREFFSIEEQEKLIGAIFGRTKAEILQDMIPWQMAYLTPSDQHDMMSMFHKVTRNTMFNEWLREWWEGYDHERVTAEVATTTPSLTSDPLEIISKYLSTEVTDVCEGNVFGKPITSEQNEGQWHATDVEKAVIFNLNDETKDFDGSQRNKTFEECTKLVSHGDVDRDADVITEHMIDTERPEEHEKSIQHDHLLTISQEDLEAAIRRVSRDSSLDPKTKSYMIQNLLMSRWNAKHHTQLETNVTTESQGFAGQYPSYKDSLKKEFGCKHYKRNCKLLAPCCNQLHTCIHCHDETTDHSLDRKSITKMMCMNCLVVQPIGKTCSTVSCGNLSMGKYFCKICKLFDDSRDIYHCPYCNLCRVGKGLGIDYFHCMNCNACMSRALSVHVCREKCLEDNCPICHEYIFTSTLPVKSLPCGHLMHSACFQEYTYTHYTCPICSKSLGDMQVYFEMLDALLAEEKIPDEYSGKTQVILCNDCEKRGMAAFHWLYHKCPFCGSYNTRVL 1280
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 7551304 7558541 - Cp4.1LG18g08120.1 Cpe18g00810 485271

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe18g00810 1280 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 84 280 - -
Cpe18g00810 1280 Pfam CHY zinc finger 1045 1120 IPR008913 GO:0008270
Cpe18g00810 1280 ProSiteProfiles Zinc finger CHY-type profile. 1038 1107 IPR008913 GO:0008270
Cpe18g00810 1280 CDD Hr-like 634 777 - -
Cpe18g00810 1280 CDD RING-H2_Pirh2 1173 1216 - -
Cpe18g00810 1280 ProSiteProfiles Zinc finger RING-type profile. 1174 1216 IPR001841 -
Cpe18g00810 1280 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 287 1280 - -
Cpe18g00810 1280 CDD Hr-like 95 207 - -
Cpe18g00810 1280 Gene3D nmb1532 protein domain like 150 227 - -
Cpe18g00810 1280 Gene3D nmb1532 protein domain like 627 798 - -
Cpe18g00810 1280 ProSiteProfiles Zinc finger CTCHY-type profile. 1110 1173 IPR017921 -
Cpe18g00810 1280 SUPERFAMILY Zinc hairpin stack 1111 1165 IPR037275 -
Cpe18g00810 1280 MobiDBLite consensus disorder prediction 1 24 - -
Cpe18g00810 1280 Gene3D - 1245 1280 - -
Cpe18g00810 1280 SUPERFAMILY RING/U-box 1161 1220 - -
Cpe18g00810 1280 SMART ring_2 1174 1215 IPR001841 -
Cpe18g00810 1280 Pfam Ring finger domain 1172 1215 IPR001841 -
Cpe18g00810 1280 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 84 280 - -
Cpe18g00810 1280 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 287 1280 - -
Cpe18g00810 1280 SUPERFAMILY CHY zinc finger-like 1036 1101 IPR037274 GO:0008270
Cpe18g00810 1280 Pfam Zinc-ribbon 1221 1278 IPR039512 -
Cpe18g00810 1280 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1167 1218 IPR013083 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe18g00810 K16276 K16276, BTS; zinc finger protein-like protein - csv:101212459 2120.51
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe04g01394 Cpe18g00810 CCT
Cpe04g01394 Cpe18g00810 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01334 Cpe-Chr1:8026755 Cpe18g00810 Cpe-Chr18:7551304 3.25E-07 dispersed
Cpe18g00697 Cpe-Chr18:6931390 Cpe18g00810 Cpe-Chr18:7551304 2.87E-11 dispersed
Cpe18g00810 Cpe-Chr18:7551304 Cpe19g00436 Cpe-Chr19:3894247 3.31E-22 dispersed
Cpe18g00810 Cpe-Chr18:7551304 Cpe04g01394 Cpe-Chr4:11273317 6.32E-12 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g299 Blo04g00831 . Bda06g00810 Bda15g00514 Bpe12g00694 . . Bma12g01234 . . Cma10g00305 Cma11g00284 Car10g00290 Car11g00258 . . Cpe04g01394 . . . . . . . Cla06g01457 Cam06g1609 Cec06g1671 Cco06g1665 . . . . . Cone13ag0306 . . . . . Blo13g00170 Blo15g00066 . . Bpe07g01039 Bpe15g00528 Bma03g00898 Bma08g00059 . Cmo10g00326 Cmo11g00287 . . . . . Cpe18g00810 . . . . . . . . . . . . . . Lsi06g01320 Csa01g00206 Chy02g02353 Cme02g01729
Vvi17g483 . . . . . . . . . . Cma10g00305 . Car10g00290 . Sed08g0191 . . Bhi02g00363 Tan09g2172 Cmetu02g1853 . Hepe09g0145 . . . . . . . . . . . Cone13ag0096 Cone19ag0099 . . . . . Blo15g00295 . . Bpe07g00800 . . . . Cmo10g00326 . . . . . . Cpe18g00810 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009308 0 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 3 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe18g00810 Cpe_Chr18 FPKM 42.418472 48.009403 13.062746 12.77029 37.880333 28.785675 40.369804 3.308133 2.051131 2.549374