Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe18g00815 | ATGGATCTTCCACTTGTTAACGAATCATCCTTCTCCGCTGCGAATCCTTCTGCTTACAGCTTAGCCGCGATTTGGCCTTTCGGTGGGGAGCAGGGCGGGAACGCATTGGGTCTCCGAATGGCTAGTTTGAGTCAGAATCTTGGTGGGTTTCCCGAGAGCTCCACGAATCGCGACGGATCAATGGAGGAATCGACTGTGACGGAGCAGAGTGGCGGTGGGAGAAAGAGGAAGGATGTGAGCTCTGAGGATGAATCTTCGAGAATGGTTTCCACCAGTAGTGCTAATCAATTGAGTAACTCAAATGGTAAACGGATGAAAGTGGTGGCATCCAGACATGAAGGTGGTGGTATAAAAGCTGAAGTAGAACCTAGCTCAGCAGATGGTAAGAAGCTGGCCGAGCAAAGCCGGAAACCCGAACCACCAAAAGATTACATCCATGTCAGAGCGAGAAGGGGCCAAGCTACTGATAGCCATAGTTTAGCAGAAAGAGCAAGAAGAGAGAAGATCAGTGAGAGAATGAAAATTTTGCAGGACTTGGTTCCCGGTTGTAACAAGGTTATTGGAAAAGCACTTGTTCTTGATGAGATAATAAATTATGTCCAATCACTCCAACGTCAAGTCGAGTTACTCTCCATGAAGCTTGAAGCTGTGAATTCCAGAATGAACTTAAGCTCAGCCATAGAAGTTTTTACCGCAAAAAATATGGTTAATCAACCATATGATGCAGTTGGAATATTATATGGTTCACAAGCGGCAAGAGATTATACCCAAGCTGCGCAACCGGAATGGTTGCATATGCAGATCGGTGGAAGCTTTGAAAGAACATCTTAG | 831 | 45.85 | MDLPLVNESSFSAANPSAYSLAAIWPFGGEQGGNALGLRMASLSQNLGGFPESSTNRDGSMEESTVTEQSGGGRKRKDVSSEDESSRMVSTSSANQLSNSNGKRMKVVASRHEGGGIKAEVEPSSADGKKLAEQSRKPEPPKDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYVQSLQRQVELLSMKLEAVNSRMNLSSAIEVFTAKNMVNQPYDAVGILYGSQAARDYTQAAQPEWLHMQIGGSFERTS | 276 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 18 | 7580336 | 7583534 | + | Cp4.1LG18g08040.1 | Cpe18g00815 | 485276 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe18g00815 | 276 | Pfam | Helix-loop-helix DNA-binding domain | 157 | 204 | IPR011598 | GO:0046983 | |
| Cpe18g00815 | 276 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 151 | 222 | IPR036638 | GO:0046983 | |
| Cpe18g00815 | 276 | MobiDBLite | consensus disorder prediction | 47 | 68 | - | - | |
| Cpe18g00815 | 276 | MobiDBLite | consensus disorder prediction | 47 | 142 | - | - | |
| Cpe18g00815 | 276 | MobiDBLite | consensus disorder prediction | 69 | 84 | - | - | |
| Cpe18g00815 | 276 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 153 | 203 | IPR011598 | GO:0046983 | |
| Cpe18g00815 | 276 | PANTHER | STEROL REGULATORY ELEMENT-BINDING PROTEIN | 1 | 275 | IPR024097 | GO:0006355 | |
| Cpe18g00815 | 276 | Coils | Coil | 200 | 220 | - | - | |
| Cpe18g00815 | 276 | MobiDBLite | consensus disorder prediction | 85 | 105 | - | - | |
| Cpe18g00815 | 276 | SMART | finulus | 159 | 209 | IPR011598 | GO:0046983 | |
| Cpe18g00815 | 276 | PANTHER | MYC-TYPE, BASIC HELIX-LOOP-HELIX (BHLH) DOMAIN-CONTAINING PROTEIN-RELATED | 1 | 275 | - | - | |
| Cpe18g00815 | 276 | CDD | bHLH_AtBPE_like | 143 | 225 | - | - | |
| Cpe18g00815 | 276 | MobiDBLite | consensus disorder prediction | 106 | 142 | - | - | |
| Cpe18g00815 | 276 | Gene3D | - | 150 | 228 | IPR036638 | GO:0046983 |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cpe04g01526 | Cpe18g00815 | CCT | |
| Cpe04g01526 | Cpe18g00815 | ECH |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe07g00608 | Cpe-Chr7:4169450 | Cpe18g00815 | Cpe-Chr18:7580336 | 1.62E-95 | dispersed | |
| Cpe11g00764 | Cpe-Chr11:6128187 | Cpe18g00815 | Cpe-Chr18:7580336 | 5.07E-89 | dispersed | |
| Cpe17g01125 | Cpe-Chr17:8540065 | Cpe18g00815 | Cpe-Chr18:7580336 | 6.67E-49 | dispersed | |
| Cpe18g00815 | Cpe-Chr18:7580336 | Cpe01g01393 | Cpe-Chr1:8390205 | 4.73E-45 | dispersed | |
| Cpe18g00815 | Cpe-Chr18:7580336 | Cpe04g01526 | Cpe-Chr4:12000006 | 2.80E-179 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 50924 | PF00010 | HLH | 2.40E-07 | No_clan | Cpe | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe18g00815 | - | - | csv:101215588 | 483.411 |