Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe18g00819 ATGATCATGCGAAGCACTGCTGCCGTCGTCAATGAATCCCCCGCCGCCGAGACCTGTGGCGGCGGTCCTGGTGAGATCATGCTGTTTGGTGTTAGAGTAGTGGTGGATTCGATGAGGAAGAGCGTGAGTTTGAACAATCTTTCGCAGTACGAGCAACCTCATGAAGTCGCTGATGTAATCACTAACGACAGTAAGAACGACCTTGTTTCCGTTAATAACAAAGATGATGTTGCTGCTGGTTATGCCTCTGCGGATGATGCTGTTCCCAACGCCCGGGGGAACCGCGAGCGTGAGCGCAAGCGAGGCGTGCCTTGGACTGAGGAAGAGCACAAGCTATTTTTGGTTGGACTGCAACAAGTAGGGAAGGGGGATTGGAGAGGAATTTCTAGGAACTTTGTGAAGACTCGCACCCCAACTCAGGTCGCTAGCCACGCTCAGAAATACTTTCTTCGCCGGAGCAATCTAAATCGCCGTCGCCGTAGATCTAGTCTTTTCGATATCACGACGGACACGGTCACGGCTGCTCCAATGGTTGAAGAGCCAGCGCAGCGTCAAGAAATTGCCTCTCAATCCCATTCCTTTATTCCATCACCCCCACCTGAAATTTCTAAGCACAATGTAATTCCAGTAGAGCACACTTTGCCATTTTCGTTTGGGCCAGCACCATTAGCCACCACTCTAACCAAGAATCTGATGGAAAAGTGTGGTCCTGGAGAAGTGAACACAGAAAGTGATGGATCACTGAAGCTCGGTCTCAAGGATTCCATCTTTCCCTCTAATCAAAATCCAACCTCAACTGGTTTGAACTTGAATTCAAACCCAGCAATGGAGTCATCAGCTTTGTCTCTTCGCCTTTCCTTAACATCTGACCAGAGAGAGGCTTCATCAAGACACCCAACTTTCCAGGCCATGCCAAGTTTCAATAATGGTGAGGGCATCATAAGTGCAGCCTAA 954 49.27 MIMRSTAAVVNESPAAETCGGGPGEIMLFGVRVVVDSMRKSVSLNNLSQYEQPHEVADVITNDSKNDLVSVNNKDDVAAGYASADDAVPNARGNRERERKRGVPWTEEEHKLFLVGLQQVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRSNLNRRRRRSSLFDITTDTVTAAPMVEEPAQRQEIASQSHSFIPSPPPEISKHNVIPVEHTLPFSFGPAPLATTLTKNLMEKCGPGEVNTESDGSLKLGLKDSIFPSNQNPTSTGLNLNSNPAMESSALSLRLSLTSDQREASSRHPTFQAMPSFNNGEGIISAA 317
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 7609958 7612542 - Cp4.1LG18g08280.1 Cpe18g00819 485280

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe18g00819 317 CDD SANT 104 149 IPR001005 -
Cpe18g00819 317 PANTHER KIN2 18 317 - -
Cpe18g00819 317 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 97 153 IPR017930 -
Cpe18g00819 317 Gene3D - 103 155 - -
Cpe18g00819 317 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 100 151 IPR006447 GO:0003677
Cpe18g00819 317 MobiDBLite consensus disorder prediction 254 273 - -
Cpe18g00819 317 SUPERFAMILY Homeodomain-like 99 154 IPR009057 -
Cpe18g00819 317 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 18 317 - -
Cpe18g00819 317 ProSiteProfiles SANT domain profile. 100 153 IPR017884 -
Cpe18g00819 317 MobiDBLite consensus disorder prediction 83 102 - -
Cpe18g00819 317 MobiDBLite consensus disorder prediction 287 317 - -
Cpe18g00819 317 Pfam Myb-like DNA-binding domain 104 149 IPR001005 -
Cpe18g00819 317 ProSiteProfiles Myb-like domain profile. 97 149 IPR001005 -
Cpe18g00819 317 MobiDBLite consensus disorder prediction 237 273 - -
Cpe18g00819 317 SMART sant 101 151 IPR001005 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe18g00819 - - - csv:101214626 480.33
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe04g01530 Cpe18g00819 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe17g00531 Cpe-Chr17:4445003 Cpe18g00819 Cpe-Chr18:7609958 9.03E-38 dispersed
Cpe18g00819 Cpe-Chr18:7609958 Cpe08g00729 Cpe-Chr8:5736992 2.40E-48 dispersed
Cpe01g01422 Cpe-Chr1:8542296 Cpe18g00819 Cpe-Chr18:7609958 1.74E-49 wgd
Cpe18g00819 Cpe-Chr18:7609958 Cpe20g00215 Cpe-Chr20:1228707 5.69E-75 wgd
Cpe18g00819 Cpe-Chr18:7609958 Cpe04g01530 Cpe-Chr4:12028450 2.22E-167 wgd
Cpe18g00819 Cpe-Chr18:7609958 Cpe09g01051 Cpe-Chr9:9192006 4.11E-82 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g672 Blo04g00752 . . Bda15g00706 Bpe12g00497 . . . . . . . . . Sed08g0179 . Cpe04g01530 Bhi02g00380 Tan09g2185 Cmetu02g0204 . Hepe09g0159 . . Cla06g01627 Cam06g1808 Cec06g1859 Cco06g1865 Clacu06g1768 Cmu06g1711 Cre06g2530 Cone2ag0877 . Cone13ag0104 . Lsi02g00340 Csa01g00811 . . Blo13g00036 . Bda11g01577 . Bpe07g00811 Bpe15g00619 . . . . . . . . . . Cpe18g00819 . . . . . . . . . . . . . . Lsi06g01508 . Chy02g02541 Cme02g01925
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005075 1 1 2 0 2 1 3 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 3 1 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50925 PF00249 Myb_DNA-binding 2.70E-11 CL0123 Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe18g00819 Cpe_Chr18 FPKM 18.358545 20.511961 40.883263 41.586533 85.947037 74.238503 88.269272 62.309891 67.182655 67.193741