Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe18g00823 ATGGCGGCGGTTCCCGGCGAACTTGTTGGGGTTTCTGAGGATGATTTGAAACAGAGTGGTTTGACCCAGATTCATGTTCTTGCTGTTGATGATAGCCTCGTTGATCGGAAGGTTATTGAGCGGTTGCTGAAGATCTCGTCTTGTAAAGTGACTGCTGTTGAGAGTGGGAGAAGTGCTCTTCAATATCTGGGTTTGGATGGGGAAACCAATTCTGTCCGGTTTAGTGATTTGAAGGTGAATCTCATCATCACAGATTATTCCATGCCTGAAATGAATGGATATGAACTGCTGAAGAAGATCAAGGAATCATCGGCTCTCCGGGAGATTCCTGTTGTGATAATGTCATCGGAGAATATTATGGGTCGAATAGAGAATTGCTTGAAGGAAGGGGCTGAGGAGTTCATAGTGAAGCCTGTGAAATTGTCTGATGTGAAACGACTGAGAGACTGCTTCATTATGGAAGGAGAAAATGGAGGGAAGAAGATGAGTCATAAGAGGAAGCTTCGTGTTGATGATCATGATCACCACTTCTTGACTCCTGGGTCTCCGCCGCCGCCGCCGCCGATGGTGGGTTTCGACCATTGCCAAGGGTATCTGCACCGAATCACATGTTCGTCAAAGAAACCAAGGTTCCTCAATGGCGACCAGTTCACGTAA 657 46.73 MAAVPGELVGVSEDDLKQSGLTQIHVLAVDDSLVDRKVIERLLKISSCKVTAVESGRSALQYLGLDGETNSVRFSDLKVNLIITDYSMPEMNGYELLKKIKESSALREIPVVIMSSENIMGRIENCLKEGAEEFIVKPVKLSDVKRLRDCFIMEGENGGKKMSHKRKLRVDDHDHHFLTPGSPPPPPPMVGFDHCQGYLHRITCSSKKPRFLNGDQFT 218
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 7635924 7637453 - Cp4.1LG18g08270.1 Cpe18g00823 485284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe18g00823 218 Gene3D - 24 173 - -
Cpe18g00823 218 ProSiteProfiles Response regulatory domain profile. 25 152 IPR001789 GO:0000160
Cpe18g00823 218 SUPERFAMILY CheY-like 23 146 IPR011006 -
Cpe18g00823 218 SMART REC_2 24 148 IPR001789 GO:0000160
Cpe18g00823 218 CDD REC_typeA_ARR 26 147 - -
Cpe18g00823 218 Pfam Response regulator receiver domain 26 144 IPR001789 GO:0000160
Cpe18g00823 218 PANTHER TWO-COMPONENT RESPONSE REGULATOR 21 173 IPR045279 GO:0009736
Cpe18g00823 218 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR6 21 173 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00267 Cpe-Chr1:1524322 Cpe18g00823 Cpe-Chr18:7635924 1.00E-45 dispersed
Cpe18g00823 Cpe-Chr18:7635924 Cpe19g00016 Cpe-Chr19:135237 9.84E-34 dispersed
Cpe13g00622 Cpe-Chr13:5978830 Cpe18g00823 Cpe-Chr18:7635924 2.04E-12 transposed
Cpe01g01415 Cpe-Chr1:8503744 Cpe18g00823 Cpe-Chr18:7635924 9.79E-64 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50926 PF00072 Response_reg 1.30E-21 CL0304 Cpe TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe18g00823 K14492 - csv:101214143 280.796