Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe18g00824 ATGGCTAATCTTCTTCTATCGGATTCTTCTTCGAAAGCTTATAGCCGGAAGCAGAAATCCCTCGGTCTGCTCTGCTCCAATTTTTTGAGGTTGTATGATCGAGGTGATGTTCACTCAATCAGCCTCGACAATGCCGCCTCTCGGCTAGGTGTTGAGAGGCGACGGATCTACGACATTGTCAACGTTTTAGAAAGTGTTGGAATTCTTTGTAGAAAGGCCAAGAATCAATATAGTTGGATAGGATTTTCTGGCATTCCCAAGGCACTACGGCAACTTAAGGAAGAAGATATGAAGGGAAATAGCTTTGCCATAGCTGCGTATGATCACTCAAGATTGATAGATGAAGATGAAACATGTTCAGATCTCACTTCTGTGAGCCAAGAGTCAATCCCTATGATGTCTAAATCTTCAGCCTCAGTGAGATGTGTGGCGTCAGAAAACCGGAGGGAAAAATCTCTTGCACTTCTTACGCAGAATTTTGTCAAGCTCTTTGTCTGTTCTAACGCACATCTGATTTCACTCGATGAAGCGGCAAAATTACTGCTAGGCGATGCACAAAGTGAATCCGTAATGAGAAGCAAAATCAGACGCCTTTACGATATTGCAAATGTGTTGGCTGCAATTCATCTTATTGAAAAGACGCAAACCGTTGATACCAGAAAGCCTGCATTCAGGTGGTTAGGATTTAGAGGTAAAGTTGAGAATTGTCGTGCAGGCAAGCCAATTCCATGTGGTTCAAAGAAAAGGACTTTTGGAACCGATATAACTAATATCAACTTGAAGAGAAACAAAGTGGTCAATTCATTTGATCTGAATAAGAGCCCCAATTCCCAGAAACATATGCATGTGCATCTTGAGGCTTTAAGAGAATTATTCTCTCATTACAAGGATGCCTGGAAGTTATGGTACTCTGAAACTGTGAACAGATCATCAATACAAATTCCTGAGGCATAA 954 41.51 MANLLLSDSSSKAYSRKQKSLGLLCSNFLRLYDRGDVHSISLDNAASRLGVERRRIYDIVNVLESVGILCRKAKNQYSWIGFSGIPKALRQLKEEDMKGNSFAIAAYDHSRLIDEDETCSDLTSVSQESIPMMSKSSASVRCVASENRREKSLALLTQNFVKLFVCSNAHLISLDEAAKLLLGDAQSESVMRSKIRRLYDIANVLAAIHLIEKTQTVDTRKPAFRWLGFRGKVENCRAGKPIPCGSKKRTFGTDITNINLKRNKVVNSFDLNKSPNSQKHMHVHLEALRELFSHYKDAWKLWYSETVNRSSIQIPEA 317
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 7638013 7641935 + Cp4.1LG18g08190.1 Cpe18g00824 485285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe18g00824 317 PANTHER E2F TRANSCRIPTION FACTOR-LIKE E2FF 9 286 - -
Cpe18g00824 317 Pfam E2F/DP family winged-helix DNA-binding domain 17 81 IPR003316 GO:0005667|GO:0006355
Cpe18g00824 317 Pfam E2F/DP family winged-helix DNA-binding domain 150 228 IPR003316 GO:0005667|GO:0006355
Cpe18g00824 317 Gene3D - 143 230 IPR036388 -
Cpe18g00824 317 Gene3D - 11 83 IPR036388 -
Cpe18g00824 317 SUPERFAMILY Winged helix DNA-binding domain 15 80 IPR036390 -
Cpe18g00824 317 SUPERFAMILY Winged helix DNA-binding domain 150 229 IPR036390 -
Cpe18g00824 317 SMART E2F_TDP_2 16 81 IPR003316 GO:0005667|GO:0006355
Cpe18g00824 317 SMART E2F_TDP_2 148 228 IPR003316 GO:0005667|GO:0006355
Cpe18g00824 317 PANTHER TRANSCRIPTION FACTOR E2F 9 286 IPR015633 GO:0000978|GO:0006357
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe18g00824 Cpe20g00223 CCT
Cpe09g01047 Cpe18g00824 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe18g00824 Cpe-Chr18:7638013 Cpe19g00497 Cpe-Chr19:4261540 5.49E-06 dispersed
Cpe18g00824 Cpe-Chr18:7638013 Cpe20g00223 Cpe-Chr20:1263022 9.67E-07 wgd
Cpe18g00824 Cpe-Chr18:7638013 Cpe09g01047 Cpe-Chr9:9165627 9.05E-08 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50927 PF02319 E2F_TDP 8.90E-20 CL0123 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe18g00824 K09391 - csv:101210753 425.246