Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe18g00825 ATGGCGATTTCTATTCCCAGTCGGCAGCTATTCATCGATGGCGAGTGGAGGGAACCAGTTCTCAAGAAACGCATCCCCATCGTCAACCCCGCCACTGAAGAAACAATCGGATCTATTCCCGCGGCTACTGCGGAAGATGTAGAGTTAGCAGTTGATGCTGCCCGAAAAGCTCTTGCGAGGAATAAAGGCAAAGATTGGGCATCTGCTTCGGGAGCTCTTCGTGCTAAGTATTTGCGTGCTATTGCTGCTAAGATAACAGAGAGGAAATCGGAACTAGCAAAGCTCGAAACAATAGACTGTGGAAAACCCCTGGACGAAGCTGCATGGGACATTGATGATGTTGCTGGGTGCTTCGACTACTATGCAGATCTTGCAGAAGGGTTGGATGCTAAGCAAAAAGCTCCTGTTTCCGTTCCCATGGATACATTCAAAAGCCATGTTCTTAAAGAACCCATTGGAGTTGTTGGGTTGATTACTCCCTGGAACTATCCTCTATTGATGGCTGCATGGAAAGTTGCACCTGCCTTGGCTGCTGGGTGTGCTGCAATATTGAAGCCATCAGAACTGGCATCTGTCACCTGTTTGGAACTGGGTTCAATCTGTAAAGATGTTGGTCTTCCATCTGGTATTTTGAATATTCTGACAGGATTTGGCCCTGAAGCTGGTGCTCCTCTAGCATCTCATCCTCACGTTGACAAGATTGCATTTACTGGGAGTTGTGCTACTGGAAGCAAGATTATGACAGCAGCTGCCCAACTGGTCAAGCCTGTAACCATGGAACTTGGTGGGAAAAGTCCAATTGTTGTTTTTGATGATGTCGACCTTGACAAGGCTGCCGAATGGACGATTTTTGGTTGCTTTTGGACAAATGGTCAGATTTGCAGTGCCACATCCCGCCTGCTTGTACATGAAAACATTGCTGATGAATTCTTGGATAGGCTCGTGAAGTGGTGCCAGAACATTAAGATTTCAGATCCTTTAGAAGAAGGTTGCAGGCTTGGCCCTGTTGTTAGTGCGGGACAGTATGAGAAAGTTCTGAACTTCGTCTCAACTGCTGAGCGTGAAGGTGCTAAGATTCTATTTGGTGGAGTTCGCCCTAAGCACCTAAAGAAGGGATACTTCGTTGAACCAGCCATCGTTACTAATGTTACAACCTCCATGCAACTATGGAGAGAAGAGGTCTTCGGACCTGTTCTATGTGTGAAGACCTTTAGTTCTGAAGATGAAGCTATTGAGTTAGCAAATGATACAATATATGGGTTAGGTGCTGCTGTAATATCAAATGATTTAGAAAGGTGTGAGCGTGTAACCAAGGCTTTACAGGCAGGAATTGTGTGGGTTAATTGCTCCCAACCATGCTTCACTCAAGCCCCATGGGGAGGCAACAAACGCAGTGGCTTTGGTCGAGAACTAGGGGAATGGGGACTTGACAATTATCTGACTGTAAAGCAGGTTACTGAGTATGTTTCCAATGAACCATGGGGATGGTACAAGTCTCCTTCTAAATTGTAG 1512 46.1 MAISIPSRQLFIDGEWREPVLKKRIPIVNPATEETIGSIPAATAEDVELAVDAARKALARNKGKDWASASGALRAKYLRAIAAKITERKSELAKLETIDCGKPLDEAAWDIDDVAGCFDYYADLAEGLDAKQKAPVSVPMDTFKSHVLKEPIGVVGLITPWNYPLLMAAWKVAPALAAGCAAILKPSELASVTCLELGSICKDVGLPSGILNILTGFGPEAGAPLASHPHVDKIAFTGSCATGSKIMTAAAQLVKPVTMELGGKSPIVVFDDVDLDKAAEWTIFGCFWTNGQICSATSRLLVHENIADEFLDRLVKWCQNIKISDPLEEGCRLGPVVSAGQYEKVLNFVSTAEREGAKILFGGVRPKHLKKGYFVEPAIVTNVTTSMQLWREEVFGPVLCVKTFSSEDEAIELANDTIYGLGAAVISNDLERCERVTKALQAGIVWVNCSQPCFTQAPWGGNKRSGFGRELGEWGLDNYLTVKQVTEYVSNEPWGWYKSPSKL 503
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 7639618 7651946 - Cp4.1LG18g08260.1 Cpe18g00825 485286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe18g00825 503 PANTHER BETAINE ALDEHYDE DEHYDROGENASE 1, CHLOROPLASTIC 1 500 - -
Cpe18g00825 503 Pfam Aldehyde dehydrogenase family 16 485 IPR015590 GO:0016491
Cpe18g00825 503 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 267 458 IPR016163 GO:0016620
Cpe18g00825 503 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 24 483 IPR016162 GO:0016491
Cpe18g00825 503 PANTHER BETAINE ALDEHYDE DEHYDROGENASE 1 500 - -
Cpe18g00825 503 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 259 266 IPR029510 GO:0016491
Cpe18g00825 503 SUPERFAMILY ALDH-like 5 490 IPR016161 GO:0016491
Cpe18g00825 503 CDD ALDH_F10_BADH 27 487 - -
Cpe18g00825 503 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 287 298 IPR016160 GO:0016491
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe12g00317 Cpe-Chr12:2101994 Cpe18g00825 Cpe-Chr18:7639618 4.11E-64 dispersed
Cpe16g00704 Cpe-Chr16:7228718 Cpe18g00825 Cpe-Chr18:7639618 3.72E-07 dispersed
Cpe18g00444 Cpe-Chr18:5463577 Cpe18g00825 Cpe-Chr18:7639618 1.36E-94 dispersed
Cpe18g00825 Cpe-Chr18:7639618 Cpe07g00001 Cpe-Chr7:393 2.65E-122 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe18g00825 K00130 - csv:101213657 953.355