Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe18g00826 ATGGAATCGTGTATTAACTTTTATTTAATATTTATCCATTTGCATATGTTTACATATAATAGAAGGGTCGAATCGAACGAGCCTCCTAAAGAGTTCATCTGTACAGTTTCTTGTTCGTTAATGGCAGACCCAGTTGTCGTCTCTTCTGGACAGACATTTGAGCGTGTTTCTGCGCAGGTTTGCAGAAATTTGGGGTTCTCCCCTGTGTTAGAGGATGGTTCCAAGCCAGATTTCTCGACTGTGATTCCCAATTTGGCTATGAAGAAGACGATTCTCCATTGGTGTGAGAAGTCCGGTGCTCGGAATCCTCAGGCGCCTGATTACAGCTCCGTTGAGAGGCGTGTTAGTGCATTAATGGAGCAGGAGAAGCCTCACACCGGAATTAGGGACTTGTCGGATAGGGATTTATTGGAGGGAGTATCAGATTTGCCATCGATGAATTTTTCGCACGCCGCGACGGAGTATGGCCGCCGTCCAGAACATTTCTACACGAGCTCCTCCGAGGAATCTGTTATCGTCGGAGGAAGTCCGGGAACTCCTCTGCCATTCACGATTCGACCTGTGTGTTACTCCTTTTCGTCTTCTTCCTCCGAAAATGTGGAAAACAACGCGCTCATCCAAGCCTTAGGCACGAATTCATCGATTGGGGAAGAAGAGAATAAATTCTTGGCGAAGCTCGAGAGTCCCGATGTGTTTGAGCAAGAAGAAGGTATTGTTTCGCTAAGAAAAGTCACGAAAGCCGATGAGAATATTAGGGTTTCGCTTTGTACGCCTCGGATTCTTTCATCTCTCCATTCTTTGGTAACCTCGAGATACCCCAAAGTACAGATCAACGCCGTCGCCTCTCTGGTAAATCTCTCCCTCGAAAAGCCAAACAAACTAAAGATTGCGCGGTCAGGATTGGTTCCACACTTAATCGACGCGCTAAAAGGAGGACATACTGAAACGCAAGAACACGCCGCCGAAGCGCTCTTTAGTCTGGCCTTAGAGGACGAAAATCGGATGGCGATCGGATTTCTCGGCGCAATGCCGCCGCTCCTCTACGCACTCCGATCGGAAAACGAGCGAACTCGAGACGTTTCCGCTCTATGTCTCTACAACCTAACAATGATACAAAGCAACCGTGTGAAGCTCGTGAAACTCGGCGCCGTAACGACTCTTCTTTCCATGGTGAAATCGAGAAACTCGACGAACTGGCTGTTGCTGATCCTCTGCAACATCGCCGTGTGCCAGGAGGGTAGATCAGCAATGCTGGACGGCGATGCCGTCGGGCTCTTGGTCGGAATGCTGAGGGAGAAAGAGCTGGACTCCGAATCGGCTCGCGAGAATTGCGTTGCGGCATTGTACGCACTGAGCTATGGAAGCATGAGATTCAAGGGATTGGCGAAGGAAGCCGGAGCAATGGAGGTTTTGAGGGAGATTATTGAAAGAGGAAGCGAGAGGGCGAGGGAGAAGGCGAAGAAGATATTGGAGAGGATGAGGACGAGAGGGAGATCGGATGACGACGGCGATCGTGGCGGCGAGTCGAGTTTCGAGAGAGATGGACTCAGTTCGACTGGGTACCGAATGGGAGGTGGAAGGATTCCCAGCTCGGCCAATACGATGCCGTTTTGA 1614 49.94 MESCINFYLIFIHLHMFTYNRRVESNEPPKEFICTVSCSLMADPVVVSSGQTFERVSAQVCRNLGFSPVLEDGSKPDFSTVIPNLAMKKTILHWCEKSGARNPQAPDYSSVERRVSALMEQEKPHTGIRDLSDRDLLEGVSDLPSMNFSHAATEYGRRPEHFYTSSSEESVIVGGSPGTPLPFTIRPVCYSFSSSSSENVENNALIQALGTNSSIGEEENKFLAKLESPDVFEQEEGIVSLRKVTKADENIRVSLCTPRILSSLHSLVTSRYPKVQINAVASLVNLSLEKPNKLKIARSGLVPHLIDALKGGHTETQEHAAEALFSLALEDENRMAIGFLGAMPPLLYALRSENERTRDVSALCLYNLTMIQSNRVKLVKLGAVTTLLSMVKSRNSTNWLLLILCNIAVCQEGRSAMLDGDAVGLLVGMLREKELDSESARENCVAALYALSYGSMRFKGLAKEAGAMEVLREIIERGSERAREKAKKILERMRTRGRSDDDGDRGGESSFERDGLSSTGYRMGGGRIPSSANTMPF 537
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 7657630 7659918 - Cp4.1LG18g08310.1 Cpe18g00826 485287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe18g00826 537 Pfam Armadillo/beta-catenin-like repeat 291 328 IPR000225 GO:0005515
Cpe18g00826 537 Gene3D - 216 496 IPR011989 -
Cpe18g00826 537 MobiDBLite consensus disorder prediction 490 511 - -
Cpe18g00826 537 Pfam U-box domain 29 97 IPR003613 GO:0004842|GO:0016567
Cpe18g00826 537 CDD RING-Ubox 33 69 - -
Cpe18g00826 537 SMART Ubox_2 31 94 IPR003613 GO:0004842|GO:0016567
Cpe18g00826 537 SUPERFAMILY ARM repeat 221 492 IPR016024 -
Cpe18g00826 537 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 25 100 IPR013083 -
Cpe18g00826 537 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 38 19 526 - -
Cpe18g00826 537 MobiDBLite consensus disorder prediction 490 537 - -
Cpe18g00826 537 PANTHER U BOX DOMAIN-CONTAINING 19 526 - -
Cpe18g00826 537 SMART arm_5 330 370 IPR000225 GO:0005515
Cpe18g00826 537 SMART arm_5 410 453 IPR000225 GO:0005515
Cpe18g00826 537 SMART arm_5 289 329 IPR000225 GO:0005515
Cpe18g00826 537 SUPERFAMILY RING/U-box 16 101 - -
Cpe18g00826 537 ProSiteProfiles U-box domain profile. 27 101 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe18g00826 Cpe-Chr18:7657630 Cpe02g01239 Cpe-Chr2:11139117 3.22E-14 dispersed
Cpe01g02363 Cpe-Chr1:19763882 Cpe18g00826 Cpe-Chr18:7657630 5.79E-165 wgd
Cpe13g00921 Cpe-Chr13:7813731 Cpe18g00826 Cpe-Chr18:7657630 8.35E-170 wgd
Cpe18g00826 Cpe-Chr18:7657630 Cpe20g00225 Cpe-Chr20:1295346 3.07E-178 wgd
Cpe18g00826 Cpe-Chr18:7657630 Cpe04g01536 Cpe-Chr4:12057760 0 wgd
Cpe18g00826 Cpe-Chr18:7657630 Cpe09g01045 Cpe-Chr9:9139986 1.33E-171 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe18g00826 - - cmax:111485627 950.658