Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe18g00828 ATGACAGGAAAGCGCGATGTTGCGAGCCGATGCAAGAAGGCATCCGAATGGTCCTTCAAAAAAGAAATTACGCGGCCGTACTCCGCCACAGCACCGGCTTCTTCTTTTGCAGTCCGGTCAATTTATTGCAATCTTTGCCAATACCATCGCATCGTCCTGTGTCTGTATGTCTTCCGCCCTCCTATGTTGTCGCAGAAAAGAAATCCAGATGATGGAGATGGTCCGGCGGATGGTGACAATCCCGATGATAAGCGTAGAAAATTCCGTTTCTGGAGTGTGATTCAGGATGCCCCATCATTGCAATCAATGCAACAGCTATTGGAGCCACTCATTCGTAAAGTGGTAAGGGAGGAGGTCGAATTGGCGCTCAGAAAGTACATTACTAGGGTGCAAAGGAATGATGGAAATGACGGTAAAGAAATCTGTTCTTCCGGGTCGAGATGCTTAAAATTGAAGTTTGTAACTGGTATGTCTCTCCCGGTATTTACCGGAGCTCGCATTGAAGGAAGAGATGGTTCCAACTTGACGGTGGCTTTGGTTGACACCATAAGTGGGGAAGTTGTTGACACTGGGCCTCAATCCTCAGCCAAAGTGGAAATTGTAGTCCTAGAGGGTGATTTTGAGGGTGGAGGTGATAATTATACTGTGGAGGAGTTTAAGAATAACATTGTAAGAGAGAGGGAAGGAAAGAAACCACTTCTTACAGGAGATACATTTGTGAGTCTCAAAGATGGCATTGGTATGGTGAGATTTCTTTCACTGACAATTCAAGCTGGACTCGATGCCGTCGGTTTAGGCTGGATTTTTGGCCCTGGTATGTCTACTAAAATGTGGGAAGCTACAATTGAGCATGCACAGACATGTGTGCTCGATAAGAAGATTTACGTATACAAGCCTCGTGATTTGGAACAGAAAAGCGGAGTGGTATTTAATGTTGTAGGGCAAGTGATGGGGCTACTTTCAGATTACCAGTACGTTCCCAAAGATAAGCTATCTGAAGCTGATGCTCACAACCTGGTTATCTCCGCATACGAACACTGGGAAGAAGTCGACTCTATTGACGATGAAAATTCTCTTGTAGGTGGCTCTTCTCACCCACTCAGTTTCCTTTACACCCCGAGCTCACCAATGGAGGATCATTCTTATGGTAGCAAGTACTTAGCTTCTCCAAAATTTAGTGGCTTTGATTTTACACCATCAAATGCATACACTTCTGAAATAATTTCATCGATGGGTTCTATTGGGAATTCGAGTGGCTTGGACGATCATGCTTTGCAGGGTTTTGATTCTATGGTTGTAAGATATGATCAGATGCCAAGTTCCCCAAACTTTGCCAACTCTTCTCTGATCTGTGATTCTGAGCCACTAAACTCATCTTTCTTTGATGTGGATCATCTGCAAGTTCTAGAATCTGATTTCCAATGTAGCTCGATTTTCGAATCACGTTCTACTCTTCAAGGTGGCTCCTCATCATGTGGTGCTCAAATGAGATGGACTAAAGTATATGGTGTGCTAAAGTGGTACTTTTTGTTGAGATTTGTAATTAGGCGAAACAAAAGCGTATCCGAGAGAAACAAAGGTGCTGTGGATCCTTCGTCACCCTCGCGCCGTGGATTCCACGTCGAACCAGGGACTCGTGAAAAGGCTTTATTAGCTGAGGACCCTTCTCTAAGGCGGTTCAGATCACACAAGAAAGGTGTCTCTCGAATCAAAAAAATTGGAGATGTTCTGACAATCGTAGTTGTTGCAGGATGTTGCTATGAGATCTATGTGAAAGCAACCATGCGAGAAGAAGCTCGGCAGGCGAAGGCAGCTCGCGAAAAATCTATAATATTTCATGCACAAAGTAGAGCAATGAACGTGGTAACGTAA 1872 44.34 MTGKRDVASRCKKASEWSFKKEITRPYSATAPASSFAVRSIYCNLCQYHRIVLCLYVFRPPMLSQKRNPDDGDGPADGDNPDDKRRKFRFWSVIQDAPSLQSMQQLLEPLIRKVVREEVELALRKYITRVQRNDGNDGKEICSSGSRCLKLKFVTGMSLPVFTGARIEGRDGSNLTVALVDTISGEVVDTGPQSSAKVEIVVLEGDFEGGGDNYTVEEFKNNIVREREGKKPLLTGDTFVSLKDGIGMVRFLSLTIQAGLDAVGLGWIFGPGMSTKMWEATIEHAQTCVLDKKIYVYKPRDLEQKSGVVFNVVGQVMGLLSDYQYVPKDKLSEADAHNLVISAYEHWEEVDSIDDENSLVGGSSHPLSFLYTPSSPMEDHSYGSKYLASPKFSGFDFTPSNAYTSEIISSMGSIGNSSGLDDHALQGFDSMVVRYDQMPSSPNFANSSLICDSEPLNSSFFDVDHLQVLESDFQCSSIFESRSTLQGGSSSCGAQMRWTKVYGVLKWYFLLRFVIRRNKSVSERNKGAVDPSSPSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSRIKKIGDVLTIVVVAGCCYEIYVKATMREEARQAKAAREKSIIFHAQSRAMNVVT 623
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 7671185 7681095 + Cp4.1LG18g08230.1 Cpe18g00828 485289

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe18g00828 623 Pfam Calmodulin binding protein C-terminal domain 293 351 IPR046829 -
Cpe18g00828 623 Pfam Calmodulin binding protein-like N-terminal domain 149 255 IPR046831 -
Cpe18g00828 623 PANTHER CALMODULIN-BINDING PROTEIN 60 A 65 255 - -
Cpe18g00828 623 PANTHER CALMODULIN-BINDING PROTEIN 60 A 260 517 - -
Cpe18g00828 623 Pfam Calmodulin binding protein central domain 260 288 IPR046830 -
Cpe18g00828 623 PANTHER OS02G0177800 PROTEIN 65 255 IPR012416 GO:0005516
Cpe18g00828 623 PANTHER OS02G0177800 PROTEIN 260 517 IPR012416 GO:0005516
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe18g00828 - - - csv:101211405 435.261
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe18g00828 Cpe20g00130 CCT
Cpe04g01539 Cpe18g00828 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe18g00828 Cpe-Chr18:7671185 Cpe20g00130 Cpe-Chr20:723081 2.36E-27 dispersed
Cpe04g01539 Cpe-Chr4:12075061 Cpe18g00828 Cpe-Chr18:7671185 3.66E-47 transposed
Cpe18g00828 Cpe-Chr18:7671185 Cpe04g01537 Cpe-Chr4:12066980 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g294 . . . . . . . . . . . . . . . Cpe20g00130 . . . . . . . . . . . . . . . Cone2ag0623 . . . Lsi02g00191 . Chy12g01428 Cme12g01866 . . . . . Bpe15g00529 . . . . . . . Car13g00849 . . Cpe18g00828 . . . . . . . . . . . . . . . . . .
Vvi17g697 . . Bda06g00580 . . . . . . . . Cma11g00112 Car10g00137 Car11g00111 Sed08g0156 . Cpe04g01539 Bhi02g00403 Tan09g2209 . . Hepe09g0176 . . . . . . . . . . . Cone13ag0124 Cone19ag0127 . . . . . Blo15g00280 . . Bpe07g00821 . . . . Cmo10g00153 Cmo11g00115 . . . . . Cpe18g00828 . . . . . . . . . . . . . . Lsi06g01527 Csa01g00175 . Cme02g01944
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003704 1 3 1 1 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 5 3 1 46
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe18g00828 Cpe_Chr18 FPKM 9.970976 11.911901 6.5936 5.92211 15.175967 15.53475 18.023087 16.718607 15.646732 17.975401