Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe18g00829 ATGGCGTTTTTAGGGACAACCCAAAAGTGCAAGGCCTGTGACAAAACTGTTTACTTGGTTGATCAGCTCACTGCTGATAACAAAATCTACCACAAGGCCTGTTTCAGGTGCTACCATTGCAAGAGCACTCTAAAGTTGTTCAATTACTCCTCCTTTGAAGGTGTATTATATTGCAAACCTCACTTTGATCAGTTGTTCAAGATGACTGGAAGCTTGGAAAAAAGTTTTGAAGGTACTCCAAGAACCATTAGAACAGACAGATCTACCAATCAGGTCCAATCCAACAGCAAAGTGTCGAGTTTATTTGCTGGAACTCAAGATAAATGTGTTACTTGCAAGAAAACTGTTTATCCAATTGAGAAGGTGGCAGTAGATAGTAAATCATACCACAGAGCTTGCTTCAGGTGCTCACATGGAGGATGTGTGATTAGCCCATCAAACTACATAGCACACGAACATCGACTGTACTGTAGGCATCATCACAACCAACTCTTCAAACAGAAGGGGAATTTCAGCCAACTTGACAAGCATGAAGAGATTAAAGGGAGTGACTGA 555 41.26 MAFLGTTQKCKACDKTVYLVDQLTADNKIYHKACFRCYHCKSTLKLFNYSSFEGVLYCKPHFDQLFKMTGSLEKSFEGTPRTIRTDRSTNQVQSNSKVSSLFAGTQDKCVTCKKTVYPIEKVAVDSKSYHRACFRCSHGGCVISPSNYIAHEHRLYCRHHHNQLFKQKGNFSQLDKHEEIKGSD 184
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 7681935 7685202 + Cp4.1LG18g08180.1 Cpe18g00829 485290

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe18g00829 184 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Cpe18g00829 184 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Cpe18g00829 184 ProSiteProfiles LIM domain profile. 107 167 IPR001781 -
Cpe18g00829 184 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Cpe18g00829 184 CDD LIM1_SF3 6 67 - -
Cpe18g00829 184 Pfam LIM domain 109 164 IPR001781 -
Cpe18g00829 184 Pfam LIM domain 10 64 IPR001781 -
Cpe18g00829 184 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 2 181 - -
Cpe18g00829 184 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Cpe18g00829 184 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 135 173 - -
Cpe18g00829 184 CDD LIM2_SF3 109 169 - -
Cpe18g00829 184 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 101 134 - -
Cpe18g00829 184 Gene3D Cysteine Rich Protein 103 173 - -
Cpe18g00829 184 Gene3D Cysteine Rich Protein 5 74 - -
Cpe18g00829 184 PANTHER OS06G0237300 PROTEIN 2 181 IPR045268 GO:0051015
Cpe18g00829 184 SMART lim_4 9 61 IPR001781 -
Cpe18g00829 184 SMART lim_4 108 160 IPR001781 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe18g00829 K09377 CSRP; cysteine and glycine-rich protein - csv:101212133 386.341
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe04g01541 Cpe18g00829 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00224 Cpe-Chr2:1155344 Cpe18g00829 Cpe-Chr18:7681935 1.20E-18 dispersed
Cpe04g00329 Cpe-Chr4:4048868 Cpe18g00829 Cpe-Chr18:7681935 5.15E-15 dispersed
Cpe04g01541 Cpe-Chr4:12078964 Cpe18g00829 Cpe-Chr18:7681935 4.01E-18 dispersed
Cpe07g00520 Cpe-Chr7:3427026 Cpe18g00829 Cpe-Chr18:7681935 7.41E-92 dispersed
Cpe11g00115 Cpe-Chr11:642741 Cpe18g00829 Cpe-Chr18:7681935 2.18E-93 dispersed
Cpe13g01077 Cpe-Chr13:8720474 Cpe18g00829 Cpe-Chr18:7681935 1.07E-78 dispersed
Cpe15g00434 Cpe-Chr15:5480174 Cpe18g00829 Cpe-Chr18:7681935 1.70E-60 dispersed
Cpe18g00829 Cpe-Chr18:7681935 Cpe01g00148 Cpe-Chr1:846535 3.54E-73 dispersed
Cpe18g00829 Cpe-Chr18:7681935 Cpe06g00204 Cpe-Chr6:1091380 1.80E-93 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g698 Blo04g00744 . . . Bpe12g00582 . . . . . Cma10g00145 . Car10g00136 Car11g00110 Sed08g0155 . Cpe04g01541 Bhi02g00404 Tan09g2210 Cmetu02g0989 . Hepe09g0177 . . Cla06g01642 Cam06g1826 Cec06g1874 Cco06g1881 Clacu06g1785 Cmu06g1726 Cre06g2545 . . . Cone19ag0128 . . . . Blo13g00045 . . Bda14g00823 . . Bma03g00797 Bma08g00180 . Cmo10g00152 . . . . . . Cpe18g00829 . . . . . . . . . . . . . . Lsi06g01528 Csa01g00174 Chy02g02557 Cme02g01945
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000380 2 4 3 3 2 4 8 4 4 3 3 4 8 4 4 7 4 3 8 4 4 4 4 4 4 3 4 8 4 3 128
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50928 PF00412 LIM 3.20E-10 CL0167 Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe18g00829 Cpe_Chr18 FPKM 43.929073 49.52673 78.832146 77.146652 22.871437 28.131971 19.742554 62.388767 60.920689 61.014805