Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe18g00832 ATGTTTTTGACTCGAGTGATTGGGAGAAGATTTCTGGCTGCTGCTAGATCAGAAACTTCTTCTGCCACAGCTGCTGCTTCTACAACTACGATGGGCTACAACCCGCTTGAGGAGTTTTTTGAGGCAGATAGAAGTCCAAATGACGACAAACCTGTTGTATATGGTCGAAGTTGGAAGGCTTCAGAACTTCGGCTCAAGTCTTGGGATGATCTTAATAAGCTATGGTATGTTCTGTTGAAGGAGAAAAATATGTTGATGACACAGCGCCAGATGCTTAATGCACAAAATCTAAGGTTTCCTAATCCAGAACGCATTCCCAAGGTGCGGAAGTCAATGTGCCGAATCAAGCAAGTACTTACCGAGAGAGCCATCGACGAACCAGATCCTCGGAGATCTGCAGAGATGAAGAGGATGGTAAACGCTCTGTGA 429 45.22 MFLTRVIGRRFLAAARSETSSATAAASTTTMGYNPLEEFFEADRSPNDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPKVRKSMCRIKQVLTERAIDEPDPRRSAEMKRMVNAL 142
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 7698695 7701685 + Cp4.1LG18g08400.1 Cpe18g00832 485293

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe18g00832 142 Gene3D - 31 131 IPR038340 -
Cpe18g00832 142 CDD Ribosomal_L29_HIP 61 122 - -
Cpe18g00832 142 SUPERFAMILY Ribosomal protein L29 (L29p) 58 125 IPR036049 GO:0003735|GO:0005840|GO:0006412
Cpe18g00832 142 TIGRFAM L29: ribosomal protein uL29 62 122 IPR001854 GO:0003735|GO:0005840|GO:0006412
Cpe18g00832 142 Pfam Mitochondrial 39-S ribosomal protein L47 (MRP-L47) 36 122 IPR010729 GO:0003735|GO:0005761|GO:0006412
Cpe18g00832 142 PANTHER RIBOSOMAL PROTEIN L47, MITOCHONDRIAL-RELATED 1 141 IPR010729 GO:0003735|GO:0005761|GO:0006412
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe18g00832 K17428 MRPL47, NCM1; large subunit ribosomal protein L47 - csv:101210906 244.202
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe18g00832 Cpe-Chr18:7698695 Cpe04g01543 Cpe-Chr4:12097234 5.55E-11 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g703 . . . . . Bpe13g00257 Bma06g00204 . . . Cma10g00141 Cma11g00108 Car10g00133 Car11g00107 . . . Bhi02g00411 . . . Hepe09g0182 . . . . . . . . . . . . . . . . . . . . Bda14g00820 . . . . . . . . . . . . Cpe18g00832 . . . . . . . . . . . . . . Lsi06g01531 Csa01g00171 Chy02g02560 Cme02g01948
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011635 2 2 1 1 1 1 1 1 1 1 0 1 0 1 1 0 1 2 2 1 1 1 1 1 1 1 0 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe18g00832 Cpe_Chr18 FPKM 16.746071 14.728009 7.691527 7.386229 3.884436 3.799401 3.701831 5.357642 7.32025 7.134818