Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe18g00833 TTGAAAGGCGGCTCGAAATCATTAATCATCTCTTTGCGTGTGGTTGGATCTGGACTTCAATTCGATCACTCTCTGTTAGATAAGGGACATGATGCCTCGGCAGCGTTATGTATTGATCTAGGGTGGGATCGAAACTGGAATTGGGGAAAATGCAAGGCTATGCATGGGCGTCGAGGTGAGGACTGGAAACGGACTCGGCACATGTGGACAGTCCCCACACGTGGTACCCAGATCGTAGAAGCAGATGGTTCTTCATCATCGTCTTCGTCTGCACTTAATTCGTTTTGCAAGGTAAGAAAGCTTTTCCCCTCCTGGCTTTTTCCTGGAGTTATGAAGGAGTGCATCACGCACTTATTTTTTGATGACTCACTATTCTGTACTCTCTTTGAACAGGGTGGACGTAGGATTAGTGTTGGTGATTGTGCTCTTTTCAAACCCCCTCAAGATTCCCCACCTTTTATTGGCATAATCCGGTGGTTAACGGCTGGTAAGGAGAATAAGTTAAAGTTAGGTGTGAATTGGCTTTATCGATCTTCTGAACTAAAGCTCGGCAAAGGCATCCTTTTGGAAGCTGCGCCGAACGAAGTCTTCTATTCCTTTCATAAGGATGAAATTCCTGCTGCATCTTTACTCCATCCGTGTAAAGTTGCATTTCTTCCAAAGGACGTTAAACTTTCATCAGGGATCTCGTCATTTGTGTGTCGGAGAGTGTATGACATAACAAATAAGTGTTTATGGTGGCTTACCGATCAGGATTATATTAATGAACGTCAGGAAGAAGTAGATCAATTGCTATATAAGACAAGATTAGAAATGCATGCTTCAGTGCAATCTGGTGGCCGATCACCTAAGCCTACAAGTGGTCCAACATCAACATCTCAGTTAAAAGCTAATTCAGATAGTGTTCAAACCACTACCTTTCCTTCTCACACAAAAGGCAAGAAAAGAGAAAGAAGTGACCAGGGATTAGAATCTGTTAAACGTGAGCGCATCATCAAAGCTGATGAAGGGGATTCTGCTAACTGCAGATTGGAAAATACGTTAAAGTCTGAGATTGCAAAAATTGCTGAAAAAGGAGGCTTAGTTGATTCTGAAGCTGTCGAGAAATTGGTGCAGCTTTTGCTGACTGATAGAAGTGACAAAAAAATTGATTGGGCTTGCAGATCAGCACTTGCAGGTGTCATAGCTGCCACAGATAAGGTCGAGTGCCTTAGTCAATTTGTGCATCTTAAGGGTTTACTTGTACTTGATGAATGGCTCCAAGAGGTTCACAGGGGGAAAATTGGCAGTGGTGGTAGCCCCAAGGATAGCGATAAAGCAGTTGAGGAATTTCTCCTGGTTTTGCTTCGAGCCCTTGATAAACTACCTGTAAATCTTCCTGCTTTACAGATGTGCAATATTGGAAAGTCTGTGAATCATTTACGCTCACATAAGAATTTAGAAATTCAGAAGAAAGCAAGGAGCTTAGTGGACACATGGAAAAAACGCGTTGAAGCAGAAATGAACATTAATGATGCAAAGTCTGGTTCAAACCAAGCTGTTGCATGGAGTGCAAGGACTCGTCCATCTGAAGTTTCTCATGGAGGGAGGAATCAAGATGCATCCTCTGAAGTTGCCATGAAGAGCTCGGTTTCTCAGCTCACTACATCCAAATCTGTTTCAGTTAAGCTAGCTCAGGATGAGAGTGTTACAAGATCTGCATCTGCCTCTCCTGGTTCGATGAAACCAGTTTTATCACCTGCATCAGCAAGCATTAACTCGAAAGATGGATCTTCCAGAAATCCTGGTGTTTGTGGCACTACTGATCTTGCTCAAACTATTGCCAAGGATGAAAAGAGTAGCAGTTCCAGCCAGTCCCACAATAATAGTCAATCTTGTTCTAGTGAACACGCTAAAAGTGGTGGCTTAGGGAAGGAGGATGCAAGAAGCTCTACTGCTGGTTCAATGAGCGTGAACAAGATCTCAGGTGGTGGATCTCGCCAGCGCAAGTCAGTTAATGGATTTCCTGGTTCTGTTCTCTCGGGGGCTCAACGAGATGTAGGATCTGGGAAAAGTTCTTTGCATAGAAACACAGTCTTAGAGAGATCATCACAATCTGGAATGACCTTTGAAAAGGCATGTGATGGACCTATTGTTGAGGGAAACAGTCCTAAATTGATAGTGAAGATCACCAATCGTGGCCGGAGTCCTGCACAGAGTGCTAGTGGAGGATCTTCTGAAGATCCTTCGATAATGAATACCAGGGCTTCTTCTCCTCCACTTTCAGAGAAGCTTGATCAATTTGATCACAGTAAGAGTGATACATGTCAACCTAATATTACTGGAGATGTGAATGCTGAGCCCTGGCAGAATAGTGATGTAAAGGATATGGTGACTGGGGCTGATGATGGCGATGGATCTCCTGCTGCTGTAAATGGTGAAGAGCGATGTAGGACTGCTGAGGATGTTAAAGTTTCAAAGGCAAATTCATCATCATTAGCAAATGATCAAAAGAATGGGAAGTTACATGAGGCTTCTTTTAGCTCTATGAATGCTTTAATTGAGAGTTGTATTAAATGCTCCGAAGCGAGTATGCCTACCTCTCTCACAGATAATGTTGGAATGAATTTACTCGCTAGTGTGGCAGCTGTTGAGATGTCAAAGTCTGATTTTGTTTTGCCTTCCGATACTCAAGGAAATATCACTACAGTTGACCGAAGAGGCAGTGATTGTAAAGTCAAAGCATCTTGTCCTGAAGAGGATGCTAGAGATAACATGCAGTCAAATGATGCTATGGTTGTTAATGAGCAGGGCGTGATCATTGGTTCCTTTGGAGCTAATGGGGATGGAAGTTCTGCTTCACATTCTGAAGAGAAACCTATTGGAGATCTAAATGGTCATTCAAAATCTTCTGGTTTAAATTTGCAACAAACGGCTGTGCCACTGGCAGATGGATGTATAAAAATGGACGAGGCTGGAGGCCCTGCCTCTCCTGCTAGGATACCAGAGAAGGGCTCTGAGATTGATGGGGCTAATCCAGTCAAGGACAGAAAGACATCTGATGTAGTAGATGAGGATAGCAGTCCAGAATCAAGACCAAAGCCAAGCAGTTCTTTTCCTGATGGTGGCATGGTCGTTGATGGTATCTCGAATCGGGAAGTTGAAATGAATGTTGTTGACAAGCCTTTGCATCGGTTCCAAGAAGCTGATGACAATGCAGATAATAGAATGAATGGTGTTAGTACAGCAGACCAAAAGCCATCATCAAAGTCGAACAGTGATTCTGCTAAATTAAAGAATGATGAATTATTTCAGGCTTCAGGCTCTTCAAGTGATCTGGTTTCTATAAATGCAAGTGGGATGAGGGGCGAGAAGGATGATGAAACCAACGAATCAGCTGATGTCAAACAACTTGAAAAACATCAAAGTGATCGAGACTCTATGCCTTCGGAGTCCCGAGATTTAGGTGGTTTGTGTTCAGCTATCAACCATGAGGATGAGCAAGCAGAGGAGAATTTGGAATGTAAAGAGGATAATGAGAAAAGTGGAGTACAAACACATCATGGGCAATCTATTATGTCTCTTCTTCAAGAAACTGAACAGCATCTGCCATCCAAGAGATCCAAATTAGCTGGTGTAGAAGCAGAAGAGGCAGAGGAGTCTACATCTACTGCTGCAGATCCTGGTTCCATGACTGCTGCGGGGGTATCAGATATGGATGCTAAGTTGGAATTTGATTTGAATGAAGGCTTTAATGTAGATGATGGAAAATGCAGTGAGCCAAGTAGCTTTACAACGTCTGGTTGTTTGACAACTGTTCAGTTAATTAGTCCGTTGCCCCTTCCTGTATCTAATGTGGTAAGCAACATTCCTGCTTCAATTACAGTTGCAGCTGCAGCAAAAAGACCTTTCGTTCCACCTGATGATCTATTGAGGAGCAAAGGGGAACTTGGTTGGAAAGGATCAGCTGCCACAAGTGCTTTTCGACCTGCTGAACCTAGAAAAGTTCTAGAAATGCCACTAGGTGTTGCAACCACTCCACTTGCTGATGCTGTGGCTAATAAAATTTCTCGACCTCCGTTGGATATTGATTTGAATGTGCCTGATGAAAGGATTCTTGAGGATATGAATGTCCAGATGTCTACTCAGGATGTGGCCTCTAAGTCTGACCTGGCTAATAATCGTGATCTGACACATGGTATTGGTGTCTCACATGCACGTTGTTCTGGAGGACTAGATCTTGACTTGAACCGAATTGATGATGCTCCCGATCCAAGCAACTTCTCCTTGAACAACTGTCGTAGAATAGATGCTCCTCTTAATGTTAAATCATCGACTGTTCCTCTCAATGACAAGGTGAATTTTCGTAGGGACTTTGATTTAAATGGACCTATTGTTGATGAGACCCCTACTGAACCATCAATATTTCCTCAGCATGCTAGAGGCAGTATGCCATCCCAGCCTTCTGTTTCAGGTCTTTGGATGAACAGTGCAGAAATGGGAAATTTTCCATCATGGTTTCCTCCAGGGAATGCTTATTCAGCTGTTGCAATTCCATCGATTTTGCCTGATAGAGCAGAACAGCCTTTTCCAGTTGTTGCAACAAATGGACCACCCAGGATTTTGGGACCCACAAGTGGTAGCAGTCCATATAACCCTGATGTCTTTAGAGGGCCAGTATTATCATCTTCTCCGGCTGTGCCATTTCCTTCTGCAGCTTTTCAGTATCCTGTCCTGTCTTTTGGAAACGGCTTTCCTCTACCGTCAGCCACGTTTTCAGGTAATGCAACAGCATATGGCGATTCATCATCTGGTAGCAGGCTTTGCTTCCCTGCAGTCCCCTCACAGTTCCTAGGTCCTCCTGGTACAGTATCAACCCCTTATCCAAGACCTTATGTTGTCAGTCACTCAGATGGCGGCCACAATACTAGTTCTGATAGTAGTAGAAAGTGGGGAAGACAAGGTTTAGATCTAAATGCTGGACCTCTAGTTGCAGACATGGAAGGAAGAGAGGAATCATCATCCTTTGTACCCAGGCAACCATCTGTTGCCAGTTCGCAGGCCACTACCGAGGAGCATATGCGGGTTTACCAGCCAACAATTGGCATAATGAAGAGAAAGGAACCAGAGGGAGGATGGGATGGGTACAAACAGTCGTCATGGTATGCTGTGAGGATTGGAATTGAGCTGACTTCCCCTGGCTGTCATCTAACTTTGTGTGCTTTTCGGAGGAGGTGGATCAAAGCAAGAGGGTGCATCTGA 5241 43.85 LKGGSKSLIISLRVVGSGLQFDHSLLDKGHDASAALCIDLGWDRNWNWGKCKAMHGRRGEDWKRTRHMWTVPTRGTQIVEADGSSSSSSSALNSFCKVRKLFPSWLFPGVMKECITHLFFDDSLFCTLFEQGGRRISVGDCALFKPPQDSPPFIGIIRWLTAGKENKLKLGVNWLYRSSELKLGKGILLEAAPNEVFYSFHKDEIPAASLLHPCKVAFLPKDVKLSSGISSFVCRRVYDITNKCLWWLTDQDYINERQEEVDQLLYKTRLEMHASVQSGGRSPKPTSGPTSTSQLKANSDSVQTTTFPSHTKGKKRERSDQGLESVKRERIIKADEGDSANCRLENTLKSEIAKIAEKGGLVDSEAVEKLVQLLLTDRSDKKIDWACRSALAGVIAATDKVECLSQFVHLKGLLVLDEWLQEVHRGKIGSGGSPKDSDKAVEEFLLVLLRALDKLPVNLPALQMCNIGKSVNHLRSHKNLEIQKKARSLVDTWKKRVEAEMNINDAKSGSNQAVAWSARTRPSEVSHGGRNQDASSEVAMKSSVSQLTTSKSVSVKLAQDESVTRSASASPGSMKPVLSPASASINSKDGSSRNPGVCGTTDLAQTIAKDEKSSSSSQSHNNSQSCSSEHAKSGGLGKEDARSSTAGSMSVNKISGGGSRQRKSVNGFPGSVLSGAQRDVGSGKSSLHRNTVLERSSQSGMTFEKACDGPIVEGNSPKLIVKITNRGRSPAQSASGGSSEDPSIMNTRASSPPLSEKLDQFDHSKSDTCQPNITGDVNAEPWQNSDVKDMVTGADDGDGSPAAVNGEERCRTAEDVKVSKANSSSLANDQKNGKLHEASFSSMNALIESCIKCSEASMPTSLTDNVGMNLLASVAAVEMSKSDFVLPSDTQGNITTVDRRGSDCKVKASCPEEDARDNMQSNDAMVVNEQGVIIGSFGANGDGSSASHSEEKPIGDLNGHSKSSGLNLQQTAVPLADGCIKMDEAGGPASPARIPEKGSEIDGANPVKDRKTSDVVDEDSSPESRPKPSSSFPDGGMVVDGISNREVEMNVVDKPLHRFQEADDNADNRMNGVSTADQKPSSKSNSDSAKLKNDELFQASGSSSDLVSINASGMRGEKDDETNESADVKQLEKHQSDRDSMPSESRDLGGLCSAINHEDEQAEENLECKEDNEKSGVQTHHGQSIMSLLQETEQHLPSKRSKLAGVEAEEAEESTSTAADPGSMTAAGVSDMDAKLEFDLNEGFNVDDGKCSEPSSFTTSGCLTTVQLISPLPLPVSNVVSNIPASITVAAAAKRPFVPPDDLLRSKGELGWKGSAATSAFRPAEPRKVLEMPLGVATTPLADAVANKISRPPLDIDLNVPDERILEDMNVQMSTQDVASKSDLANNRDLTHGIGVSHARCSGGLDLDLNRIDDAPDPSNFSLNNCRRIDAPLNVKSSTVPLNDKVNFRRDFDLNGPIVDETPTEPSIFPQHARGSMPSQPSVSGLWMNSAEMGNFPSWFPPGNAYSAVAIPSILPDRAEQPFPVVATNGPPRILGPTSGSSPYNPDVFRGPVLSSSPAVPFPSAAFQYPVLSFGNGFPLPSATFSGNATAYGDSSSGSRLCFPAVPSQFLGPPGTVSTPYPRPYVVSHSDGGHNTSSDSSRKWGRQGLDLNAGPLVADMEGREESSSFVPRQPSVASSQATTEEHMRVYQPTIGIMKRKEPEGGWDGYKQSSWYAVRIGIELTSPGCHLTLCAFRRRWIKARGCI 1746
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 7702385 7710206 + Cp4.1LG18g08350.1 Cpe18g00833 485294

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe18g00833 1746 MobiDBLite consensus disorder prediction 1178 1194 - -
Cpe18g00833 1746 MobiDBLite consensus disorder prediction 1195 1209 - -
Cpe18g00833 1746 MobiDBLite consensus disorder prediction 678 703 - -
Cpe18g00833 1746 MobiDBLite consensus disorder prediction 1157 1177 - -
Cpe18g00833 1746 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 364 501 IPR035441 -
Cpe18g00833 1746 MobiDBLite consensus disorder prediction 937 965 - -
Cpe18g00833 1746 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 402 511 IPR035441 -
Cpe18g00833 1746 MobiDBLite consensus disorder prediction 817 832 - -
Cpe18g00833 1746 ProSiteProfiles BAH domain profile. 134 249 IPR001025 GO:0003682
Cpe18g00833 1746 MobiDBLite consensus disorder prediction 310 328 - -
Cpe18g00833 1746 MobiDBLite consensus disorder prediction 504 631 - -
Cpe18g00833 1746 MobiDBLite consensus disorder prediction 726 754 - -
Cpe18g00833 1746 MobiDBLite consensus disorder prediction 274 328 - -
Cpe18g00833 1746 MobiDBLite consensus disorder prediction 279 309 - -
Cpe18g00833 1746 MobiDBLite consensus disorder prediction 765 781 - -
Cpe18g00833 1746 Coils Coil 1152 1172 - -
Cpe18g00833 1746 PANTHER BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED 54 1714 - -
Cpe18g00833 1746 MobiDBLite consensus disorder prediction 503 711 - -
Cpe18g00833 1746 MobiDBLite consensus disorder prediction 1002 1024 - -
Cpe18g00833 1746 PANTHER BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED 54 1714 - -
Cpe18g00833 1746 SMART BAH_4 134 249 IPR001025 GO:0003682
Cpe18g00833 1746 Pfam BAH domain 136 243 IPR001025 GO:0003682
Cpe18g00833 1746 MobiDBLite consensus disorder prediction 643 671 - -
Cpe18g00833 1746 MobiDBLite consensus disorder prediction 980 1227 - -
Cpe18g00833 1746 Gene3D - 120 347 IPR043151 -
Cpe18g00833 1746 MobiDBLite consensus disorder prediction 1457 1476 - -
Cpe18g00833 1746 MobiDBLite consensus disorder prediction 726 832 - -
Cpe18g00833 1746 MobiDBLite consensus disorder prediction 1067 1110 - -
Cpe18g00833 1746 Pfam TFIIS helical bundle-like domain 448 497 IPR017923 -
Cpe18g00833 1746 ProSiteProfiles TFIIS N-terminal domain profile. 414 500 IPR017923 -
Cpe18g00833 1746 CDD TFIIS_I 422 498 - -
Cpe18g00833 1746 SMART TFS2_5 420 499 IPR003617 GO:0005634
Cpe18g00833 1746 MobiDBLite consensus disorder prediction 1050 1065 - -
Cpe18g00833 1746 MobiDBLite consensus disorder prediction 1114 1144 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe18g00833 - - - bhj:120071278 2826.2
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe04g01543 Cpe18g00833 CCT
Cpe04g01543 Cpe18g00833 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00065 Cpe-Chr2:340311 Cpe18g00833 Cpe-Chr18:7702385 1.56E-09 dispersed
Cpe04g01543 Cpe-Chr4:12097234 Cpe18g00833 Cpe-Chr18:7702385 2.71E-65 dispersed
Cpe06g00060 Cpe-Chr6:310180 Cpe18g00833 Cpe-Chr18:7702385 1.23E-08 dispersed
Cpe13g00157 Cpe-Chr13:1147702 Cpe18g00833 Cpe-Chr18:7702385 1.73E-24 dispersed
Cpe18g00833 Cpe-Chr18:7702385 Cpe03g00550 Cpe-Chr3:3222758 1.65E-88 wgd
Cpe18g00833 Cpe-Chr18:7702385 Cpe04g00566 Cpe-Chr4:6081575 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g704 . . . . Bpe12g00585 . . Bma12g01028 . . . . Car10g00132 . Sed08g1505 . Cpe04g01543 Bhi02g00413 Tan09g2404 Cmetu02g1332 . Hepe09g0183 . . Cla06g01645 Cam06g1830 Cec06g1879 Cco06g1885 Clacu06g1789 Cmu06g1731 Cre06g2549 . . Cone13ag0127 Cone19ag0131 . . . . Blo13g00047 Blo15g00276 . . Bpe07g00824 . . Bma08g00176 . Cmo10g00147 Cmo11g00110 . . . . . Cpe18g00833 . . . . . . . . . . . . . . Lsi06g01533 Csa01g00170 Chy02g02561 Cme02g01950
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003613 1 4 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 2 2 1 1 1 1 4 3 1 47
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50929 PF01426 BAH 2.00E-08 No_clan Cpe TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe18g00833 Cpe_Chr18 FPKM 28.900103 31.71471 28.367443 27.502266 17.750599 21.978958 18.256435 25.708584 23.394808 21.226507