Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe18g00835 ATGGGTCAGCCGAAGAGATCCACCTTAAGGGTCTCAAACGTTCCTGAATCCGCCGTTGCCGAAGACCTCTTGACCTTTCTCAAGTCCAAATTGGGTCCCGACTCCGTCTTCGCCATCGAAATCTTCACCGAGCGAAAGAACTGGAAATCGCGCGGCTCTGGTCGCGTACAGTTCACCACACTCGAGGCCAAATCCAAAGCCCAGTCCCTCTCCGTTCAAAACAACCTCGTCTTCAACACCCACAACCTGAGATTCTCCGAGACCAACGATGACATTATTGTGAGGCCAATACACGCCAGAAACAGGACCGAGAACGGGGTTTTGCATGTGGGTTTTATGCTGAAAGAGGATCACATGAGTGTTTTGGAGTCTTGGGAAGGTGTAAAAGCTTGGATTATGCCGGAGAGGAGGAGGGTGGAGTTCTGGATATGGCACGAAGACGAGTGCTATAAGCTTGAAGTGATGTTTGAGGAAATTCTCGAAACTACTGGATATTGTTTGGGAGATGAGAAATTGAACGCACTTCTCCTAAAGCTCAAATATGCGCCGAGAATATATAAAAGGATTTCTGGATCAAACATGGCTTCCAAATTCAGCAGCAGTCGCTACCGTCTATGCAAAGAAGAACATGATTATCTTTGGATTCGGACAACAGAGTTTTCTTCTCTGAGATCAATAGGTCAGTCCACTTCCTTTTGTTGGGAAGTTGAAGAAGATTTGCAGGCTTCAGATATCTTTTCTAGTTTCCCACTTTACAGGGAAACTCCAAAAGATATTACGTTAGAGGATGGTGGAGAATTTGGCTCTACCTCAGAGGCTGTTCCTCTGATAAAATCTGGGTTAGTTTCTAATCTAGCTTATGAGCTTCAATATCAGCTCAATTCCTTAGTTCATATGCAGAAAATTAGCCTTGCTGCAGCCAGCAATGATCTGATTGAATTCCTTAGCACTTTAGGTACTGACACTGCGTTGAATATACTTCAAAGGTTACATCAGCTGAAGTTCATATGTTATGATCCCTTGTCGTTTCTAAAGACCCAATTACATGTTCTAAAAAGGAACTGCAAAGTTCTTCCTTCGTTGTCTCAAAAGAGGTTGTCGAATAATGTGATGAACTGCTATAGAGTTCTTGTTACACCATCAAGAATTTATTGTTTGGGACCTGAGCTTGAAACTTCTAATTATGTTGTGAAAAACTTTGCATCATATGCTTCTGATTTTATGAGGGTTACTTTTGTTGAAGAGGACTGGAGTAAGCTTCCTGCAGGTGCCGTTACCACGAGTATACAGCGTGGCTTACTCTCGAAACCTTATAGAACTGAAATCTATCACCGAATAGTTAGTATTCTTCGAAATGGAATTGTTATTGGAGCCAAAAGGTTTGAGTTCTTGGCCTTCTCAGCTAGTCAACTCCGATCGAACTCTGTTTGGATGTTTGCTTCGAGCGACAACTTGAAAGCAGAAGAAATTAGACAGTGGATGGGCTGCTTTGAAAAGATTCGTAGTATCTCCAAATGTGCAGCTAGGATGGGTCAATTGTTCAGTTCTTCCACTCAAACTCTTGTTGTTCCTACCCAAGATGTTGAGATTATACCCGATATCGAAGTGAATTCTGATGGTATTGACTACTGCTTCTCAGATGGTATCGGAAAAATTTCGCTTTCATTTGCAAGGCAAGTAGCTGACAAGTGTGGATTGACTCATATCCCTTCAGCATTTCAAATTCGATATGGTGGATACAAAGGTGTCATTGCTGTGGATCGTAATTCCTTTCGTAAACTATCTTTGCGTGATAGCATGCTTAAATTCGAATCAAAGAACAAGATGCTCAATGTTACCAAGTGCAGCGACTCCATGCCTTGCTATCTAAATCGAGAGATCGTTACTCTTTTGTCAACTTTGGGAGTGAAGGACGAAAGCTTCGAGGCACTGCAGCAAGAGCAACTACATCTTCTAAGGAGAATGCTGACGGATAAAGTCGCTGCTTTGAACGTCTTGGAAAATCTGAACGGTGCTGATTCTAATAACATTCTGGTGCAGATGTTAAACCACGGGTACGAGCCTAATATTGAACCGTACCTCTCAATGATGCTTCAAGCACACTATTGGAACCTGTTTTCTGATTTAAGAAGTAGATGTAGAATATTTGTTCCAAAGGGCCGGATCCTCCTAGGCTGCTTGGATGAAACTGGTATATTAAACTATGGCCAAGTTTATGCCTGCATAACCTTGACAAAATCCGAGCTTCGGGACAGGAACCAGAACTACTTCCATAAGATAGACGAGACGAAATCTATATTGCTCGGGAAGGTAGTTGTTACAAAAAATCCATGTCTTCATCCAGGAGATGTAAGGGTTCTTGAAGCTATTTTCCATGTAGAACTAGAGGAGAAGGGATTGGTGGACTGTCTTATATTTCCTCAGAAAGGAGAAAGGCCACATACAAATGAATGTTCTGGTGGTGATCTTGATGGAGATTTATATTTCATAAGTTGGGACGAGAATCTGATTCCGCCCAAAACCGAAGCACCGATGGACTATACGGGACGGAGGCCACGTATAATGGATCACGATGTAACACTAGAGGAAATTCAGAAGTTTTTTGTTGATTATATGATCAACGACACATTAGGTGCCATTTCGACTGCACATTTAGTTCATGCAGACCGTGAACCGAAAAAAGCCCTAAGCTCAAAATGTTTAGAGCTGGCTGCACTGCACTCAATGGCAGTCGATTATGCAAAAACCGGAGCGCCAGCGGAGATGCCTCGAGTTTTAAAACCTAGGGAGTTTCCAGATTTTATGGAGAGATTTGATAAACCAATGTACAAATCCAATAATGTACTAGGAAAACTCTACAGGGCTGCGGTTAAGACGATGGAGCAAGAAAGGTCAAGACTTGTGTGGACAGAGGAGACTGCTAGAGCAATTTATGATCATGATCTTGAAGTGGATGGCTTCGAAGCTTTCCTTGAAACAGCTGAAAGTTTCAAAGTCATGTACATTGAAAAAATGAGCATTTTGATGAACTACTATGGGGCAGAGTTTGAAGATGAGATATTGATGGGCGATCTTCGAAGTCGAGCATCGTATTTACAACGTGACAATCGCAAGTACGGCGATATGAAGGATCGGATCTTGCTTTCAGTTAAGTGTGTACGTAAGGAGGCCAAAGAATGGTTCGAGAATAGCTGCGCCCCACATGAACACAAGATGATGGCTTCTGCATGGTATCATGTAACTTATCACCCTTCTTACTTCAAACAAGATATGTTCTACTTTAGCTTCCCATGGATTGTACATGATGTTTTACTCAACATAAAGGCAATGAACTCCAAAAGACGTGAAGCAGAAAAGAACTTGTAG 3366 42.25 MGQPKRSTLRVSNVPESAVAEDLLTFLKSKLGPDSVFAIEIFTERKNWKSRGSGRVQFTTLEAKSKAQSLSVQNNLVFNTHNLRFSETNDDIIVRPIHARNRTENGVLHVGFMLKEDHMSVLESWEGVKAWIMPERRRVEFWIWHEDECYKLEVMFEEILETTGYCLGDEKLNALLLKLKYAPRIYKRISGSNMASKFSSSRYRLCKEEHDYLWIRTTEFSSLRSIGQSTSFCWEVEEDLQASDIFSSFPLYRETPKDITLEDGGEFGSTSEAVPLIKSGLVSNLAYELQYQLNSLVHMQKISLAAASNDLIEFLSTLGTDTALNILQRLHQLKFICYDPLSFLKTQLHVLKRNCKVLPSLSQKRLSNNVMNCYRVLVTPSRIYCLGPELETSNYVVKNFASYASDFMRVTFVEEDWSKLPAGAVTTSIQRGLLSKPYRTEIYHRIVSILRNGIVIGAKRFEFLAFSASQLRSNSVWMFASSDNLKAEEIRQWMGCFEKIRSISKCAARMGQLFSSSTQTLVVPTQDVEIIPDIEVNSDGIDYCFSDGIGKISLSFARQVADKCGLTHIPSAFQIRYGGYKGVIAVDRNSFRKLSLRDSMLKFESKNKMLNVTKCSDSMPCYLNREIVTLLSTLGVKDESFEALQQEQLHLLRRMLTDKVAALNVLENLNGADSNNILVQMLNHGYEPNIEPYLSMMLQAHYWNLFSDLRSRCRIFVPKGRILLGCLDETGILNYGQVYACITLTKSELRDRNQNYFHKIDETKSILLGKVVVTKNPCLHPGDVRVLEAIFHVELEEKGLVDCLIFPQKGERPHTNECSGGDLDGDLYFISWDENLIPPKTEAPMDYTGRRPRIMDHDVTLEEIQKFFVDYMINDTLGAISTAHLVHADREPKKALSSKCLELAALHSMAVDYAKTGAPAEMPRVLKPREFPDFMERFDKPMYKSNNVLGKLYRAAVKTMEQERSRLVWTEETARAIYDHDLEVDGFEAFLETAESFKVMYIEKMSILMNYYGAEFEDEILMGDLRSRASYLQRDNRKYGDMKDRILLSVKCVRKEAKEWFENSCAPHEHKMMASAWYHVTYHPSYFKQDMFYFSFPWIVHDVLLNIKAMNSKRREAEKNL 1121
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 7713205 7720535 + Cp4.1LG18g08320.1 Cpe18g00835 485296

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe18g00835 1121 Pfam RNA dependent RNA polymerase 378 955 IPR007855 GO:0003968
Cpe18g00835 1121 PANTHER RNA-DEPENDENT RNA POLYMERASE 5 1115 IPR007855 GO:0003968
Cpe18g00835 1121 SUPERFAMILY RNA-binding domain, RBD 7 120 IPR035979 GO:0003676
Cpe18g00835 1121 Coils Coil 1100 1121 - -
Cpe18g00835 1121 PANTHER RNA-DEPENDENT RNA POLYMERASE 2 5 1115 - -
Cpe18g00835 1121 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 90 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe18g00835 K11699 RDR, RDRP; RNA-dependent RNA polymerase [EC:2.7.7.48] - csv:101209921 2048.86
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g01101 Cpe-Chr4:9558779 Cpe18g00835 Cpe-Chr18:7713205 4.19E-24 dispersed
Cpe11g00329 Cpe-Chr11:1751719 Cpe18g00835 Cpe-Chr18:7713205 7.22E-176 dispersed
Cpe13g00418 Cpe-Chr13:4528129 Cpe18g00835 Cpe-Chr18:7713205 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g714 . . Bda06g00585 . . . . Bma12g01030 . . Cma10g00138 . Car10g00129 . Sed08g0142 . . Bhi02g00421 Tan09g2226 Cmetu02g1382 . Hepe09g0188 . . Cla06g01649 Cam06g1834 Cec06g1883 Cco06g1889 Clacu06g1793 Cmu06g1735 Cre06g2553 . . Cone13ag0129 . . . . . . . . . Bpe07g00826 . . . . Cmo10g00144 . . . . . . Cpe18g00835 . . . . . . . . . . . . . . Lsi06g01537 Csa01g00166 Chy02g02565 Cme02g01954
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012365 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe18g00835 Cpe_Chr18 FPKM 12.6203 14.624476 27.014996 27.737179 24.077602 27.850491 22.854761 18.933771 18.566038 20.074486