Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe18g00836 ATGCCGCAGCTATCGTCTTCGGATATGTTGGATTTTCCTCCTACACCAAGAACCGTTCCACGGGTGTTGACTGCTTCCGGGATATTTTCCGATAAGGATTCGGAGGTTTCCTCGTCGAAGGGCCAAGGGAGAAAAATTATAGTGGCAAATTTTCTTCCTCTTCATGCTAAGAAGGATACAGATTCCGGGCAATGGAGCTTCAGTTTTGACGAGGATTCGCTTCTGCTTCAGCTGAAGGATGGATTCTCACCTGATGTAGATGTTATATATGTCGGGTCTTTAAAGGTCGATGTTGATGTCCGGGAGCAAGACGAGATTTCTCAGAAACTGTTGGAGGAATTTAACTGTGCACCGACTTTCATTCCTACGCACCTTCAGAAACAGTTCTATCATGGATTCTGTAAGCAACATTTGTGGCCACTTTTTCATTACATGATGCCGATTTCCCCTTACCATGGATCCCGCTTTGATCGACGTCTTTGGCAAGCATATCTTTCGGCTAACAAAAGGTTTGCCGATAAAGTTATGGAGGTAATCAATCTAGAAAAAGATTATGTCTGGATTCATGACTACCACCTTATGGTTCTCCCTACTTTTTTGAGAAAACGCTACAGTCGAATCAAGCTCGGATTCTTCCTTCATAGTCCGTTTCCTTCATCGGAAATATACCGAACTCTTCCTGTTAGAGATGAGATTCTGAGAGCGTTACTTAATGCAGACCTAATAGGTTTCCATACATTTGATTACGCTCGCCACTTCCTATCTTGTTGTAGTAGACTGCTTGGTTTGGAGTATGAATCTAAACGAGGGTATCTCACGCTCGAGTATTTTGGCCGTACAATATACATCAAGATTTTGCCTGTTGGGGTTCATATGGGTCGACTTGAATTTGCATTAGACCAACCACAGACTTCAATCAAGGTCAAGGAAATCAAAGAAAATCTCCAAGGAAAGAAACTTATTCTTGGTGTTGATGACATAGACATATTTAAAGGTATAGGTCTGAAGTTATTAGCTATGGAGCAGCTCTTGAGACAGCATCCAGAGTTACGAGGCAATGTCGTTCTGGTGCAAATTCTAAATCCAGCACGGAGCAATGGGAATGATGTACAAGAAGCAAAAAGAGAAACTTATGAGATAACCGAAAGGATTAACAAGGTTTTTGGTTGTCCGGGCTATCAACCTGTAATCTTGATTGATCATCCTATTCCTCCTCACGAGAAGATTGCATATTACGTATCAGCGGAGTGCTGCATTGTAAATGCTCTCAGGGATGGTATGAACTTAGTTCCATATGAGTACATTGTTTGTCGACAGGGAACTTCAAAAATGGATAAAGTCTTGGAAGTCTCCCTGAGTTCACCTCGTACCAGCACGATTGTCGTGTCGGAATTTATAGGTTGTTCACCGTCCCTAAGTGGTGCGGTCAGGGTAAACCCCTGGGATTTTGACGCTGTAGCTGATGCACTTTATGCAGCTGTCACCATGCCTGCTTTAGAGAAGCAACTGAGGCACGAAAAGCATTACAGATACGTTAGCTCTCACGATGTTGCTTACTGGGCTCGCAGTTTCTTGCATGATTTGGAGCGAGCATGCCAAGAACACTACAGCAAACGTTGCTGGGGCATTGGTTTAGGTTTAAGTTTCAGAATTTTGTCACTTTCTCCAAGTTTCAGGAAGCTTTCCATTGAACATATTGGCTCTGCATATCGAAACGCTTCTAGGAGAGCGATATTTTTGGATTATGATGGAACTGTGGTTTCCGAAACTTTGGTGGTCAAATCCCCATCACCTGAAGTCATTTCTATCATCAACAACCTTTGCACGGATCCAAAGAACACTGTGTTTATTGTTAGTGGCAGGGGGAAAGTTTCCCTCGGTTCATGGTTCGATTCGTGTAAGAATCTAGGTATTGCCGCTGAACACGGGTACTACTTGAGGTGGAATAGGGACTCTGATTGGGAAGTTAGTCCATTGGCTGAAAACTTTGACTGGAAAAGGATTGCAGAACCTGTGATGAACCTATACACTGAGGCAACCGATGGTTCATACATAGAGACCAAGGATAGTGCCTTGGTATGGCACTATCAAGACGCCGATCCTTATTTTGGTTCGTGTCAGGCCATGGAGCTCTTGGACCACCTTGAAAACGTCCTTGCTAACGAACCCGTAGTTGTCAAAAGAGGCCAGCAGATCGTCGAAGTAAAACCACAGGGTGTGACTAAAGGATTAGTTGCTGAAAGAGTTCTTTCCACAATGGTCAATTCTGATAAAGCACCCGACTTTGTGATGTGCATTGGAGACGATCGATCCGATGAAGATATGTTCGAGAGCATATTGAGTAGAAGCTATAGCTTATCCCTTGCTACGCCCCCGATGATATTTGCCTGTACTGTGGGACAAAAGCCTAGCAAAGCCAAATACTATTTAGACGATACCGCAGACGTTTTGACCTTGCTTCAAAGCCTGGCCAACTGTTCTAGTAGCCGTAAACTGAGATCGAGTTTTGAAACTCCTGTTTTGTTCGAGGATGATCTAGCAAGGACGATAAGTCAGTGCGAAATGGATGACGACATGTCGGATTAA 2586 43.62 MPQLSSSDMLDFPPTPRTVPRVLTASGIFSDKDSEVSSSKGQGRKIIVANFLPLHAKKDTDSGQWSFSFDEDSLLLQLKDGFSPDVDVIYVGSLKVDVDVREQDEISQKLLEEFNCAPTFIPTHLQKQFYHGFCKQHLWPLFHYMMPISPYHGSRFDRRLWQAYLSANKRFADKVMEVINLEKDYVWIHDYHLMVLPTFLRKRYSRIKLGFFLHSPFPSSEIYRTLPVRDEILRALLNADLIGFHTFDYARHFLSCCSRLLGLEYESKRGYLTLEYFGRTIYIKILPVGVHMGRLEFALDQPQTSIKVKEIKENLQGKKLILGVDDIDIFKGIGLKLLAMEQLLRQHPELRGNVVLVQILNPARSNGNDVQEAKRETYEITERINKVFGCPGYQPVILIDHPIPPHEKIAYYVSAECCIVNALRDGMNLVPYEYIVCRQGTSKMDKVLEVSLSSPRTSTIVVSEFIGCSPSLSGAVRVNPWDFDAVADALYAAVTMPALEKQLRHEKHYRYVSSHDVAYWARSFLHDLERACQEHYSKRCWGIGLGLSFRILSLSPSFRKLSIEHIGSAYRNASRRAIFLDYDGTVVSETLVVKSPSPEVISIINNLCTDPKNTVFIVSGRGKVSLGSWFDSCKNLGIAAEHGYYLRWNRDSDWEVSPLAENFDWKRIAEPVMNLYTEATDGSYIETKDSALVWHYQDADPYFGSCQAMELLDHLENVLANEPVVVKRGQQIVEVKPQGVTKGLVAERVLSTMVNSDKAPDFVMCIGDDRSDEDMFESILSRSYSLSLATPPMIFACTVGQKPSKAKYYLDDTADVLTLLQSLANCSSSRKLRSSFETPVLFEDDLARTISQCEMDDDMSD 861
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 7720004 7727430 - Cp4.1LG18g08450.1 Cpe18g00836 485297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe18g00836 861 Gene3D Glycogen Phosphorylase B; 36 296 - -
Cpe18g00836 861 PANTHER ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)-RELATED 3 835 - -
Cpe18g00836 861 Gene3D - 705 837 IPR023214 -
Cpe18g00836 861 Gene3D - 575 690 IPR023214 -
Cpe18g00836 861 CDD GT20_TPS 44 529 IPR001830 GO:0003824|GO:0005992
Cpe18g00836 861 Pfam Glycosyltransferase family 20 44 529 IPR001830 GO:0003824|GO:0005992
Cpe18g00836 861 CDD HAD_TPP 577 816 - -
Cpe18g00836 861 Pfam Trehalose-phosphatase 579 813 IPR003337 GO:0003824|GO:0005992
Cpe18g00836 861 TIGRFAM T6PP: trehalose-phosphatase 573 824 IPR003337 GO:0003824|GO:0005992
Cpe18g00836 861 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 44 533 - -
Cpe18g00836 861 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 577 777 IPR006379 -
Cpe18g00836 861 Gene3D Glycogen Phosphorylase B; 297 513 - -
Cpe18g00836 861 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 3 835 IPR001830 GO:0003824|GO:0005992
Cpe18g00836 861 SUPERFAMILY HAD-like 576 824 IPR036412 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe04g01547 Cpe18g00836 CCT
Cpe04g01547 Cpe18g00836 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe18g00836 Cpe-Chr18:7720004 Cpe08g00861 Cpe-Chr8:6802020 0 dispersed
Cpe01g00249 Cpe-Chr1:1427573 Cpe18g00836 Cpe-Chr18:7720004 0 transposed
Cpe01g01518 Cpe-Chr1:9083985 Cpe18g00836 Cpe-Chr18:7720004 0 transposed
Cpe18g00836 Cpe-Chr18:7720004 Cpe04g01547 Cpe-Chr4:12122590 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe18g00836 K16055 - csv:101209676 1569.67