Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe18g00838 AGAGGGGGAGGGCTAAAAATCGCGAGCAAAACTCCCTCTGGCTCTCCGCAGTTCTCTGTTCATCTTCCAAAAGACCTTCATGTCTCTGTCTGTGATCATATTTTTCGTCTTTGCAATGGAAAAATGCATAACATTGCGTATTCTCGTTTGGGCGACCTTCAAAAATCCTTTTCTCTGTACCGGGAAGTGCCTTGGTGGGATCATATTCTTGAACCAGATTCCGATTTCGTCTTCCGATGGCACCGCATCTTCCTCGTTACTTGCTTGATCGCGCTCTTCGTCGATCCTCTCTACTTTTATCTTCCATTCATCGGCGCTCCTGGTTGTATGCAATTCAACCTCGGACTTGGCATCGTCGTCACTTTCTTCCGCACCATCGTCGATTTGTTCTCCATGTTTCATATGCTTATGAAGTTTCGCACCGCCTTCGTTGCGCCAAATTCTAGGGTTTTTGGCCGTGGAGATCTCGTTAAGGACCCTACGGCAATTGCTATGCGCTACCTCAAGAAGGATTTTGTCATCGATCTTGCCGCTACGCTTCCCCTGCCTCAGGTGAATCCAGTCTTCTTTAATTCGTCGATTAGGGTTTCGATTGTGATTTGGTTCGTGCTTCCAGCGTTAAAAAATCCAACAGCGACCCATGCCAACCACACTCTTGCTTTGATTGTGCTAATTCAATATGCCCCCAGACTGTTTGTTATATTTCCTCTGAACCGACGAATTAATAAGACCACCGGATCAATAGCCAAAACTGCGTGGGCCGGTGCAGCTTACAATCTGCTTCTCTATTTGCTGGCTAGCCATGTACTTGCTTTGCTTCTCTTCAATTTGTTCTCCTTTCTAATTATAGGAGCTGCGTGGTATGTGGCATCCATTCAGCGGCAGGATGAGTGCTGGAAGATAGAATGTAGGAAGGAGATGAATACCACGCATTCTCCTTCTTGTAAGCCTTTTTTTCTGGACTGTGATATGCCTTGGTGGGATCATATTCTTGAACCAGATTCCGATTTCGTCTTCCGATGGCACCGCATCTTCCTCGTTACTTGCTTGATCGCGCTCTTCGTCGATCCTCTCTACTTTTATCTTCCATTCATCGGCGCTCCTGGTTGTATGCAATTCAACCTCGGACTTGGCATCGTCGTCACTTTCTTCCGCACCATCGTCGATTTGTTCTCCATGTTTCATATGCTTATGAAGTTTCGCACCGCCTTCGTTGCGCCAAATTCTAGGGTTTTTGGCCGTGGAGATCTCGTTAAGGACCCTACGGCAATTGCTATGCGCTACCTCAAGAAGGATTTTGTCATCGATCTTGCCGCTACGCTTCCCCTGCCTCAGATTGTGATTTGGTTCGTGCTTCCAGCGTTAAAAAATCCAACAGCGACCCATGCCAACCACACTCTTGCTTTGATTGTGCTAATTCAATATGCCCCCAGACTGTTTGTTATATTTCCTCTGAACCGACGAATTAATAAGACCACCGGATCAATAGCCAAAACTGCGTGGGCCGGTGCAGCTTACAATCTGCTTCTCTATTTGCTGGCTAGCCATATTATAGGAGCTGCGTGGTATGTGGCATCCATTCAGCGGCAGGATGAGTGCTGGAAGATAGAATGTAGGAAGGAGATGAATACCACGCATTCTCCTTCTTGTAAGCCTTTTTTTCTGGACTGTGATAGTTTGAATGAGCCAGAACGAAAAGCGTGGCTAAGAATTACTCATGTTCTTACAAAATGTGATGCCCTAAATGACGACAAGAATTTTCAGTTTGGGATGTTTGCTGATGCGTTCACTGCCGAAGTTGCTTCAACAAACTTCATCGAGAAGTACTTCTACTGCCTTTGGTTTGGTCTTAAGAGTTTGAGTTCATATGGGCAAAATTTAGCGACCAGCACTTCTAGTGGTGAAATTTTATTTAGCATTCTGATTTGCTCAATGGGGTTGGTTCTGTTCTCACACCTCATAGGCCAAGTGCAGGGCTATCTGCAATCCACATCTGCAAGACTTGAAGAGTGGAGAGTAAAACGAAGAGACACAGAGGAATGGATGAGGCATCGACAGCTACCCATTCACTTGCAAGACCGAGTTCGTCGATTCGTTCAATATAAATGGATTGCAACTCGAGGTGTCGACGAAGAGTCGATCTTGCGCTCTTTACCTTTGGATCTTCGACGTCAAATTCAGAGGCATCTTTCTCTTGCACTTGTTCGCCACACATTCATAACCAGAGAGGGAGATCCAGTAAATGAAATGCTCTTCATCATCAGAGGCCAACTAGAGAGCTCCACCACCAATGGTGGCAGGTCAGGATTCTTCAACTCCATCACCCTCAGACCTGGTGACTTCTGCGGTGAAGAGCTACTAACATGGGCCTTAGTCCCATCCCCCAGCATAAGCTTACCCTCCTCAACTCGAACCGTGAAGTCGCTCACTGAAGTCGAGGCGTTCGCACTTCGAGCCGAAGATCTCAAGTTTGTAGCCAGCCAGTTCAAGCGCCTCCACAGCAAGAAACTCCAGCATGCTTTCAGATACTATTCCCACCAGTGGAGGACATGGGGATCTTGCTTCATACAAGCTGCTTGGAGAAGGTATGTGAAAAGAAAGCTAGCTATGGAGTTAGCAAGACAAGAGGAGCTGTATTACGCAACAATGATGGACCAAGAATACAGCCATGGCAGTGAAATGGAAGGTGGAGAAGGAGGTGGTGGTGGTGGTGGTGGTGGTGAAACCAGTGGCTCCAAAAATACCACCAAAAAGAAATCCCCACATCTTGGAATAACAATGTTGGCTTCAAAGTTTGCAGCAAATACAAGAAGAGGGCTTCACCAGAAGTCGTTGGCACTCGTCTCAGATGTCAGCAGCTTGAAAATGCCTAAGCTGTTTAAGCCTGAGGAACCAGATTTCTCTGCTTTCCGAGATCATAGT 2922 46.54 RGGGLKIASKTPSGSPQFSVHLPKDLHVSVCDHIFRLCNGKMHNIAYSRLGDLQKSFSLYREVPWWDHILEPDSDFVFRWHRIFLVTCLIALFVDPLYFYLPFIGAPGCMQFNLGLGIVVTFFRTIVDLFSMFHMLMKFRTAFVAPNSRVFGRGDLVKDPTAIAMRYLKKDFVIDLAATLPLPQVNPVFFNSSIRVSIVIWFVLPALKNPTATHANHTLALIVLIQYAPRLFVIFPLNRRINKTTGSIAKTAWAGAAYNLLLYLLASHVLALLLFNLFSFLIIGAAWYVASIQRQDECWKIECRKEMNTTHSPSCKPFFLDCDMPWWDHILEPDSDFVFRWHRIFLVTCLIALFVDPLYFYLPFIGAPGCMQFNLGLGIVVTFFRTIVDLFSMFHMLMKFRTAFVAPNSRVFGRGDLVKDPTAIAMRYLKKDFVIDLAATLPLPQIVIWFVLPALKNPTATHANHTLALIVLIQYAPRLFVIFPLNRRINKTTGSIAKTAWAGAAYNLLLYLLASHIIGAAWYVASIQRQDECWKIECRKEMNTTHSPSCKPFFLDCDSLNEPERKAWLRITHVLTKCDALNDDKNFQFGMFADAFTAEVASTNFIEKYFYCLWFGLKSLSSYGQNLATSTSSGEILFSILICSMGLVLFSHLIGQVQGYLQSTSARLEEWRVKRRDTEEWMRHRQLPIHLQDRVRRFVQYKWIATRGVDEESILRSLPLDLRRQIQRHLSLALVRHTFITREGDPVNEMLFIIRGQLESSTTNGGRSGFFNSITLRPGDFCGEELLTWALVPSPSISLPSSTRTVKSLTEVEAFALRAEDLKFVASQFKRLHSKKLQHAFRYYSHQWRTWGSCFIQAAWRRYVKRKLAMELARQEELYYATMMDQEYSHGSEMEGGEGGGGGGGGGETSGSKNTTKKKSPHLGITMLASKFAANTRRGLHQKSLALVSDVSSLKMPKLFKPEEPDFSAFRDHS 974
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 7736171 7742588 + Cp4.1LG18g08370.1 Cpe18g00838 485299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe18g00838 974 SUPERFAMILY Voltage-gated potassium channels 333 662 - -
Cpe18g00838 974 Pfam Ion transport protein 80 290 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cpe18g00838 974 Pfam Ion transport protein 341 667 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cpe18g00838 974 Gene3D - 344 661 - -
Cpe18g00838 974 Gene3D Jelly Rolls 733 849 IPR014710 -
Cpe18g00838 974 MobiDBLite consensus disorder prediction 890 920 - -
Cpe18g00838 974 SUPERFAMILY cAMP-binding domain-like 669 838 IPR018490 -
Cpe18g00838 974 Gene3D Helix hairpin bin 662 730 - -
Cpe18g00838 974 Pfam Cyclic nucleotide-binding domain 736 824 IPR000595 -
Cpe18g00838 974 SMART cnmp_10 714 844 IPR000595 -
Cpe18g00838 974 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 737 970 - -
Cpe18g00838 974 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 41 323 - -
Cpe18g00838 974 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 324 737 - -
Cpe18g00838 974 SUPERFAMILY Voltage-gated potassium channels 72 278 - -
Cpe18g00838 974 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 16-RELATED 737 970 - -
Cpe18g00838 974 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 16-RELATED 41 323 - -
Cpe18g00838 974 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 16-RELATED 324 737 - -
Cpe18g00838 974 CDD CAP_ED 714 844 IPR000595 -
Cpe18g00838 974 ProSiteProfiles cAMP/cGMP binding motif profile. 740 843 IPR000595 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe18g00596 Cpe-Chr18:6342951 Cpe18g00838 Cpe-Chr18:7736171 7.27E-71 dispersed
Cpe18g00838 Cpe-Chr18:7736171 Cpe04g00085 Cpe-Chr4:795745 1.43E-47 dispersed
Cpe18g00838 Cpe-Chr18:7736171 Cpe03g00554 Cpe-Chr3:3258098 1.73E-85 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe18g00838 K05391 - csv:101209760 1090.1