Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe18g00839 ATGAAGGAGAGCAATGATGGATTTGTGCGGGCGGATCAGATTGATCTGAAGAGTTTGGATGAGCAGCTTGAGAGGCATCTTAGCAGAGCCTTGACCATGGAGAAGAACAAGAAGAAAGATGAAGACGGCAATAGCTTTCTCACTTCTGCAACCATTGCTCGCAGTAGGTCTACTAAAGTCGCCGCTAAGGAGCGGCAAGAGTGGGAGATCGATCCGTCCAAACTGATAATCAAGAGCGTCATTGCTCGTGGTACTTTCGGCACCGTCCACCGCGGCGTTTACGACGGACTAGATGTCGCTGTCAAGTTGCTGGATTGGGGAGAAGAAGGCCACAGGACAGAAGCTGAAATTGCTTCACTCAGGGCAGCTTTTAAACAGGAAGTTGCTGTTTGGCATAAACTAGAGCATCCCAATTTTATAGGGGCAACAATGGGCTCAGCGGAGTTACAGATCCAAACTGAAAATGGCCTAATAGGCATGCCAAGCAACATATGCTGTGTTGTGGTGGAATATCTTGCCGGAGGTGCCCTTAAATCTTATCTCATAAAGAACAGGAGAAGGAAGCTAGCTTTCAAGGTGGTTGTCCAATTGGCACTTGATCTTGCTAGAGGGTTGAGTTACCTTCATTCACAGAAGATTGTTCACAGAGATGTAAAGACAGAAAACATGCTGTTGGACAAAACACGTACAGTAAAAATTGCTGATTTTGGTGTTGCTAGAGTTGAGGCCTCAAATCCCAACGACATGACTGGGGAGACTGGGACACTCGGTTACATGGCTCCTGAGGTTCTCAATGGCAACCCATATAACAGGAAGTGCGACGTGTACAGCTTCGGTATCTGCCTGTGGGAAATTTATTGCTGTGACATGCCATATCCCGACCTTAGTTTCTCCGAAGTGACTTCTGCTGTGGTTCGTCAGAATTTGAGGCCAGAGATACCGAGATGTTGCCCGAGCTCCCTAGCAAATGTAATGAAGCGATGCTGGGATGCAACCCCGGACAAGCGGCCCGAAATGGATGAAGTAGTTTCTATGTTGGAAGCCATTGACACGTCCAAGGGTGGAGGTATGATCCCTGTTGATCAAGCTCAGGGTTGTCTATGCTTTCGAAAATATAGAGGACCCTAA 1128 47.52 MKESNDGFVRADQIDLKSLDEQLERHLSRALTMEKNKKKDEDGNSFLTSATIARSRSTKVAAKERQEWEIDPSKLIIKSVIARGTFGTVHRGVYDGLDVAVKLLDWGEEGHRTEAEIASLRAAFKQEVAVWHKLEHPNFIGATMGSAELQIQTENGLIGMPSNICCVVVEYLAGGALKSYLIKNRRRKLAFKVVVQLALDLARGLSYLHSQKIVHRDVKTENMLLDKTRTVKIADFGVARVEASNPNDMTGETGTLGYMAPEVLNGNPYNRKCDVYSFGICLWEIYCCDMPYPDLSFSEVTSAVVRQNLRPEIPRCCPSSLANVMKRCWDATPDKRPEMDEVVSMLEAIDTSKGGGMIPVDQAQGCLCFRKYRGP 375
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 7743553 7747532 - Cp4.1LG18g08430.1 Cpe18g00839 485300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe18g00839 375 Gene3D Phosphorylase Kinase; domain 1 63 155 - -
Cpe18g00839 375 ProSitePatterns Serine/Threonine protein kinases active-site signature. 213 225 IPR008271 GO:0004672|GO:0006468
Cpe18g00839 375 Pfam Protein tyrosine and serine/threonine kinase 77 346 IPR001245 GO:0004672|GO:0006468
Cpe18g00839 375 PANTHER - 1 369 - -
Cpe18g00839 375 SUPERFAMILY Protein kinase-like (PK-like) 58 346 IPR011009 -
Cpe18g00839 375 Coils Coil 16 36 - -
Cpe18g00839 375 CDD STKc_MAP3K-like 81 346 - -
Cpe18g00839 375 Gene3D Transferase(Phosphotransferase) domain 1 173 362 - -
Cpe18g00839 375 ProSiteProfiles Protein kinase domain profile. 75 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe18g00839 375 SMART serkin_6 75 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe18g00839 375 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 1 369 - -
Cpe18g00839 375 PRINTS Tyrosine kinase catalytic domain signature 207 225 IPR001245 GO:0004672|GO:0006468
Cpe18g00839 375 PRINTS Tyrosine kinase catalytic domain signature 273 295 IPR001245 GO:0004672|GO:0006468
Cpe18g00839 375 PRINTS Tyrosine kinase catalytic domain signature 317 339 IPR001245 GO:0004672|GO:0006468
Cpe18g00839 375 PRINTS Tyrosine kinase catalytic domain signature 169 182 IPR001245 GO:0004672|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe04g01549 Cpe18g00839 CCT
Cpe04g01549 Cpe18g00839 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01453 Cpe-Chr3:11593287 Cpe18g00839 Cpe-Chr18:7743553 1.72E-171 dispersed
Cpe08g00274 Cpe-Chr8:1762011 Cpe18g00839 Cpe-Chr18:7743553 0 dispersed
Cpe17g00866 Cpe-Chr17:6706885 Cpe18g00839 Cpe-Chr18:7743553 1.32E-66 dispersed
Cpe18g00839 Cpe-Chr18:7743553 Cpe11g00660 Cpe-Chr11:4407567 5.99E-73 dispersed
Cpe18g00839 Cpe-Chr18:7743553 Cpe03g00561 Cpe-Chr3:3329868 1.68E-53 wgd
Cpe18g00839 Cpe-Chr18:7743553 Cpe04g01549 Cpe-Chr4:12135714 0 wgd
Cpe18g00839 Cpe-Chr18:7743553 Cpe04g00554 Cpe-Chr4:5962969 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63005 PF07714 PK_Tyr_Ser-Thr 1.30E-60 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe18g00839 - - csv:101209182 744.962