Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe18g00840 ATGGACTCGTCAACAATGGTCCATATCGTCTTCTTCCTGCTCCTCTCGCAATTGTCGCTCTCTCTGCTCCATGTTTCGTTTGTTTCTGCAGATCAGGCTACATTTAATGCTTCTATCCAGTTCAATCCCTTCACGGCCAAAGCTTCTCTGGTTCGTTACTGGAATACGCATGTTTCCAATCAACTTCCGAAGCCTGATTTTCTGTTCGCCAAAGCCTCGCCGCTCTCCGTTGTGGATGCCGCCGTGTTCGCCAAGCACGCTGCCCTAGGCTCGCTCACTTCCCGATTGGAAACGTTCTGTTATTCGGCTAATTTGTTCTGTTCGTTTGATTCTCAAGAAACTTCCGTTCCGCGCTTTAAGGATGCCGATTTCAAATTGTATGGAAATAAAAATTTCAACAACTATGGCGCGGCTCGAATCGGTGGCGCTGACTCCTTCAAGAACTATTCCGACGGGTTGAACACGGCCGATCACTCGTTCAAGCGTTACAGTGGGAACTCGAGTAATCACAAGGAAGGATTCACGAACTATGCGGAGGATGGTAATGTGGCGAACAATAATTTCATCAGCTACGCCGCTGAATCGAAGGGCGGTTCTGGCGAGTTCGTGAACTACGACAAAATCGTCAATGTGCCGAATCTCCGATTCACGGCCTACGATTTGGACTCCAGAGCTCACAAGCTCTCGTTTACGAGTTACGGAAACGAGACGAATTCCGGAAGTCAATCGTTCACGAGCTACGGCAAGAACGGCAATGGCGTGCCGCAGGAATTCAGTAGCTACTCTGATGGCTCCAACATTCTTACATCGACATTCTCTGGCTACGGCGAGTCAGGGAAGAGCGCGAACGATTCGTTCAAGGCTTACGGTCTCTCCGGCAACAATCCGCACTCAAACTTCAAGAACTACGGCAAGGGCGGAAAATCACAGATCGATACATTCTCGAATTACAGAAACGGAGCGAACGTCGGCGACGATAGTTTTCAGTCGTATGCGAAGAATTCGAACTCCGGGAGAGTGAACTTTGCAAGTTACGGACAATCCTTCAACCACGGTAACGATTCGTTCAAAGAATACGGCAAAGGATCGATCGGCCAAACGACGGTCGGATTCAGAAGCTACAGCGTTGATCGGAACTTCACGACGTATGCACAGAAAGGCGTATCGTTTTCTGAATACAGCGCGACGGGGAGTGGCATTAACGTAAATAGATGGGTGGAACCGGGCAAGTTCTTCAGAGAGTCTGAATTGAAGCAGGGGAATGTCATGGTGATGCCGGACATCAGAGACAAAATGCCACCGAGATCATTCCTTCCGAGGGCCATTTTGGTAAACATACCATTCTCCTCGTCAAAGATCTCCGAGACAAAGCAAATCTTCCACGCGCGAAATGGCTCGACGATGGAGCACGTGATTACCAGCACGCTGGCGGAGTGCGAGCGGGCGCCGAGCATGGGCGAGACAAAGCGGTGCGTGGGGTCGGCAGAGGACATGATAGACTTCGCCACAGCGGTGTTGGGGCGGAACGTGGTGGCGAGGACGACGGCGAGTGTGAATGGATCAACAGAGAAGGTGGAGATCGGAGAAGTGAAAGGAATCAACGGCGGAGAGTTAACGAGATCAGTATCATGCCATCAGAGTTTGTACCCTTACTTACTCTATTACTGCCACTCAGTACCCAAAGTCCGTATCTACGAAGCCGATATCCTGAGGCTGAAAACGAACGAAAAAATCAATCGTGGGGTTGCAATTTGTCATATGGACACGTCATCATGGGGCCCAAAGCACGGCGCATTTGTAGCACTTGGGTCCGGTCCAGGTCAAATAGAAGTCTGCCACTGGATATTCGAGAACGACATGTCGTGGAGCGTCGCCGACTGA 1881 50.45 MDSSTMVHIVFFLLLSQLSLSLLHVSFVSADQATFNASIQFNPFTAKASLVRYWNTHVSNQLPKPDFLFAKASPLSVVDAAVFAKHAALGSLTSRLETFCYSANLFCSFDSQETSVPRFKDADFKLYGNKNFNNYGAARIGGADSFKNYSDGLNTADHSFKRYSGNSSNHKEGFTNYAEDGNVANNNFISYAAESKGGSGEFVNYDKIVNVPNLRFTAYDLDSRAHKLSFTSYGNETNSGSQSFTSYGKNGNGVPQEFSSYSDGSNILTSTFSGYGESGKSANDSFKAYGLSGNNPHSNFKNYGKGGKSQIDTFSNYRNGANVGDDSFQSYAKNSNSGRVNFASYGQSFNHGNDSFKEYGKGSIGQTTVGFRSYSVDRNFTTYAQKGVSFSEYSATGSGINVNRWVEPGKFFRESELKQGNVMVMPDIRDKMPPRSFLPRAILVNIPFSSSKISETKQIFHARNGSTMEHVITSTLAECERAPSMGETKRCVGSAEDMIDFATAVLGRNVVARTTASVNGSTEKVEIGEVKGINGGELTRSVSCHQSLYPYLLYYCHSVPKVRIYEADILRLKTNEKINRGVAICHMDTSSWGPKHGAFVALGSGPGQIEVCHWIFENDMSWSVAD 626
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 7749667 7752366 - Cp4.1LG18g08420.1 Cpe18g00840 485301

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe18g00840 626 Pfam BURP domain 411 622 IPR004873 -
Cpe18g00840 626 PANTHER POLYGALACTURONASE-1 NON-CATALYTIC SUBUNIT BETA 10 626 - -
Cpe18g00840 626 ProSiteProfiles BURP domain profile. 411 625 IPR004873 -
Cpe18g00840 626 SMART BURP_2 409 625 IPR004873 -
Cpe18g00840 626 PANTHER POLYGALACTURONASE 1 BETA-LIKE PROTEIN 2 10 626 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe18g00840 - - - cmo:103493915 1050.81
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00005 Cpe-Chr7:22897 Cpe18g00840 Cpe-Chr18:7749667 0 dispersed
Cpe16g00232 Cpe-Chr16:4411787 Cpe18g00840 Cpe-Chr18:7749667 1.43E-16 dispersed
Cpe18g00840 Cpe-Chr18:7749667 Cpe04g00131 Cpe-Chr4:1176738 6.77E-27 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g730 . . Bda06g00590 . . . . . . . Cma10g00130 . Car10g00122 . Sed08g0134 . . Bhi02g00434 Tan09g2235 Cmetu02g1681 . Hepe09g0194 . . Cla06g01656 Cam06g1840 Cec06g1891 Cco06g1896 Clacu06g1800 Cmu06g1742 Cre06g2560 . . Cone13ag0134 . . . . . . . . . Bpe07g00832 . . . . Cmo10g00137 . . . . . . Cpe18g00840 . . . . . . . . . . . . . . Lsi06g01546 Csa01g00158 Chy02g02572 Cme02g01962
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013205 1 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe18g00840 Cpe_Chr18 FPKM 13.055116 13.164326 10.120086 11.212718 17.349789 17.635319 18.130585 11.006932 10.646454 10.56992