Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe18g00841 | ATGTTTGTAGATAATGGACTTGCTGCTGGAATGGGTTTGGACTTTGGGTGGCAGCAGAGGTATGCTCGATTTTGTGGAAGAATTGTGGTCCTTTCAATCCTTGCACTTCTGCTATATCCATTTCTTTGGGCTTGGACTGCCATCGGTACTTTATGGTTTAGAGAAGCCCATAAATGTCTTTTTGAGCAAGGCCAGAAATGGGGATTCCTTATTTGGCTTCTTTTTAGCTACTGTGCACTCGTATGCATTGCTTGCGTGTCATTGGGAAAGTGGTTAACTCGTAGACAAGCACTCTTGTTTCGGGCGCAACAAGGGATCCCTGTATCAGAATATGGGGTCTTAGTTGACATGATCCGAGTACCTGATTGGGCTTTTGAAGCCGCAGGACAAGAAACAAGAGTAATGGGCCAAGATGCTGCTGCATATCATCCTGGACTTTATTTGACTCCTGCTCAGAGGGAAGCTGTGGAAGCACTTATTGAGGAACTTCCCAAATTCAGGTTAAAGGCTGTTCCAACAGATTGCAGTGAATGTCCTATCTGCTTAGAAGAGTTCCATGTAGGGAACGAGGTTCGTGGCCTCCCTTGTGCTCATAATTTCCATGTAGGATGCATTGACGAGTGGCTTCGACTAAATGTGAAATGTCCTAGATGTCGCTGCTCGGTCTTCCCAAACCTTGATCTTAGTGCTCTGTCCAATCTTCATTCTGATACTGAAAGGCCATCTGCAAGTGTTGTTACGGCCAACCGTTATATGAGACCTCAACCTTCCAGCCAAAGTTATCTGGTGAGATTGCAGGGTCTGCTTCGGCCTGTTCGCACAGAAAACACTGTTGCACACGGTGATTTAGAGTCTGCTGGTGCTTTGGAAGCTGCTGAGAATGCTGAGAATGGATCTTCCCATGACCAAACTATACCGGAAAGGTCTCCCGTAAGACCCATGTCTTTGAGTCAGTCCACGTCACAACGCTAG | 972 | 46.4 | MFVDNGLAAGMGLDFGWQQRYARFCGRIVVLSILALLLYPFLWAWTAIGTLWFREAHKCLFEQGQKWGFLIWLLFSYCALVCIACVSLGKWLTRRQALLFRAQQGIPVSEYGVLVDMIRVPDWAFEAAGQETRVMGQDAAAYHPGLYLTPAQREAVEALIEELPKFRLKAVPTDCSECPICLEEFHVGNEVRGLPCAHNFHVGCIDEWLRLNVKCPRCRCSVFPNLDLSALSNLHSDTERPSASVVTANRYMRPQPSSQSYLVRLQGLLRPVRTENTVAHGDLESAGALEAAENAENGSSHDQTIPERSPVRPMSLSQSTSQR | 323 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
18 | 7755223 | 7759989 | + | Cp4.1LG18g08340.1 | Cpe18g00841 | 485302 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe18g00841 | 323 | ProSiteProfiles | Zinc finger RING-type profile. | 178 | 219 | IPR001841 | - | |
Cpe18g00841 | 323 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE SIS3 | 1 | 297 | - | - | |
Cpe18g00841 | 323 | MobiDBLite | consensus disorder prediction | 284 | 323 | - | - | |
Cpe18g00841 | 323 | Pfam | Ring finger domain | 177 | 219 | IPR001841 | - | |
Cpe18g00841 | 323 | CDD | RING-H2_RNF111_like | 177 | 221 | - | - | |
Cpe18g00841 | 323 | MobiDBLite | consensus disorder prediction | 296 | 323 | - | - | |
Cpe18g00841 | 323 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE SIS3 | 1 | 297 | IPR044793 | GO:0004842|GO:0010182 | |
Cpe18g00841 | 323 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 147 | 224 | IPR013083 | - | |
Cpe18g00841 | 323 | SUPERFAMILY | RING/U-box | 159 | 227 | - | - | |
Cpe18g00841 | 323 | SMART | ring_2 | 178 | 218 | IPR001841 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cpe18g00841 | Cpe20g00235 | CCT | |
Cpe09g01032 | Cpe18g00841 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe13g00990 | Cpe-Chr13:8173990 | Cpe18g00841 | Cpe-Chr18:7755223 | 1.78E-06 | dispersed | |
Cpe18g00841 | Cpe-Chr18:7755223 | Cpe05g00568 | Cpe-Chr5:3428728 | 7.32E-13 | dispersed | |
Cpe18g00841 | Cpe-Chr18:7755223 | Cpe20g00235 | Cpe-Chr20:1342753 | 5.38E-147 | wgd | |
Cpe18g00841 | Cpe-Chr18:7755223 | Cpe09g01032 | Cpe-Chr9:9074155 | 4.48E-153 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe18g00841 | K16284 | - | csv:101208939 | 604.364 |