Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe18g00841 ATGTTTGTAGATAATGGACTTGCTGCTGGAATGGGTTTGGACTTTGGGTGGCAGCAGAGGTATGCTCGATTTTGTGGAAGAATTGTGGTCCTTTCAATCCTTGCACTTCTGCTATATCCATTTCTTTGGGCTTGGACTGCCATCGGTACTTTATGGTTTAGAGAAGCCCATAAATGTCTTTTTGAGCAAGGCCAGAAATGGGGATTCCTTATTTGGCTTCTTTTTAGCTACTGTGCACTCGTATGCATTGCTTGCGTGTCATTGGGAAAGTGGTTAACTCGTAGACAAGCACTCTTGTTTCGGGCGCAACAAGGGATCCCTGTATCAGAATATGGGGTCTTAGTTGACATGATCCGAGTACCTGATTGGGCTTTTGAAGCCGCAGGACAAGAAACAAGAGTAATGGGCCAAGATGCTGCTGCATATCATCCTGGACTTTATTTGACTCCTGCTCAGAGGGAAGCTGTGGAAGCACTTATTGAGGAACTTCCCAAATTCAGGTTAAAGGCTGTTCCAACAGATTGCAGTGAATGTCCTATCTGCTTAGAAGAGTTCCATGTAGGGAACGAGGTTCGTGGCCTCCCTTGTGCTCATAATTTCCATGTAGGATGCATTGACGAGTGGCTTCGACTAAATGTGAAATGTCCTAGATGTCGCTGCTCGGTCTTCCCAAACCTTGATCTTAGTGCTCTGTCCAATCTTCATTCTGATACTGAAAGGCCATCTGCAAGTGTTGTTACGGCCAACCGTTATATGAGACCTCAACCTTCCAGCCAAAGTTATCTGGTGAGATTGCAGGGTCTGCTTCGGCCTGTTCGCACAGAAAACACTGTTGCACACGGTGATTTAGAGTCTGCTGGTGCTTTGGAAGCTGCTGAGAATGCTGAGAATGGATCTTCCCATGACCAAACTATACCGGAAAGGTCTCCCGTAAGACCCATGTCTTTGAGTCAGTCCACGTCACAACGCTAG 972 46.4 MFVDNGLAAGMGLDFGWQQRYARFCGRIVVLSILALLLYPFLWAWTAIGTLWFREAHKCLFEQGQKWGFLIWLLFSYCALVCIACVSLGKWLTRRQALLFRAQQGIPVSEYGVLVDMIRVPDWAFEAAGQETRVMGQDAAAYHPGLYLTPAQREAVEALIEELPKFRLKAVPTDCSECPICLEEFHVGNEVRGLPCAHNFHVGCIDEWLRLNVKCPRCRCSVFPNLDLSALSNLHSDTERPSASVVTANRYMRPQPSSQSYLVRLQGLLRPVRTENTVAHGDLESAGALEAAENAENGSSHDQTIPERSPVRPMSLSQSTSQR 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 7755223 7759989 + Cp4.1LG18g08340.1 Cpe18g00841 485302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe18g00841 323 ProSiteProfiles Zinc finger RING-type profile. 178 219 IPR001841 -
Cpe18g00841 323 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 297 - -
Cpe18g00841 323 MobiDBLite consensus disorder prediction 284 323 - -
Cpe18g00841 323 Pfam Ring finger domain 177 219 IPR001841 -
Cpe18g00841 323 CDD RING-H2_RNF111_like 177 221 - -
Cpe18g00841 323 MobiDBLite consensus disorder prediction 296 323 - -
Cpe18g00841 323 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 297 IPR044793 GO:0004842|GO:0010182
Cpe18g00841 323 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 147 224 IPR013083 -
Cpe18g00841 323 SUPERFAMILY RING/U-box 159 227 - -
Cpe18g00841 323 SMART ring_2 178 218 IPR001841 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe18g00841 Cpe20g00235 CCT
Cpe09g01032 Cpe18g00841 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe13g00990 Cpe-Chr13:8173990 Cpe18g00841 Cpe-Chr18:7755223 1.78E-06 dispersed
Cpe18g00841 Cpe-Chr18:7755223 Cpe05g00568 Cpe-Chr5:3428728 7.32E-13 dispersed
Cpe18g00841 Cpe-Chr18:7755223 Cpe20g00235 Cpe-Chr20:1342753 5.38E-147 wgd
Cpe18g00841 Cpe-Chr18:7755223 Cpe09g01032 Cpe-Chr9:9074155 4.48E-153 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe18g00841 K16284 - csv:101208939 604.364