Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe18g00843 ATGCCGGGAATTGTCATGGATGAGATTAATGAAGAAAGGACTGTGAATAAACACAACGGTTCTTCAATTCATATGGAAGAATCGTATGGAAACAAGTCGCCGAGGAGCGGGTTGAGTCTTCAGAGCCCTGGAAGTGTTCATGTCCATTTCCCTGTTGATGGCTTGGTTGATACCTCTATTGAGAAGCTCTATGAAAATGTTTGTGATATGCAAAGTTCGGATCGGTCACCTTCAAGGCGTAGCTTTGGTTCTGATGGTGAGGAATCCAGGATTGATTCTGAACTGAATCATCTTGTAGGGGGAGAGATGAGGGAGGTAGATATAATAAAGGAGGAAGAGGAGATTGTTGAGAAGCCTGAACATAACTTGCCTAGTGAATCTATGAATCATTCACCATCTGCCGATAAGAAGGAGAAAACAGAAAATACGCAACCTGGGAGCTCGAAACGTCTTTCTTCTGGAAGAAAAGCTCCTCACCTGCATTTGGACCTGGAGACATCGTCGAAATCAAGTCCCAGGGGCAAACGTTTGTCTGATAAGCCCCCTTTTAGCAGGAAGAATGAAAGGAATTTGAAAAGTCCAGTTGCTGGTCACTCAAAGAAACCGAAAGATTCACCTTTGAGAGGCTCAAACATGCTGAATGGAACGGAGGATTTCAATGAATCAACGATGGATAATCCTGATCTAGGACCCTTTCTACTTAAGCAAGCAAGGAATTTAGTTTCTTCAGGGGAAAATCTGCAGAAAGCGCTTTTATTAGCTCTTCGTGCTGCAAAGTCTTTTGAGCTATCTGCAAATGGGAAACCCAGCTTAGAACTTGCTATGTGTTTGCACGTGACAGCAGCAATATACTGCAGCTTAGGCCAATACAGTGAGGCAGTACCTCTATTGGAGCATTCGATTGAGATTCCTGCCATCGAGGAAGGCCACGAGCATGCACTGGCAAAATTTGCAGGCCACATGCAGTTGGGTGATACCTATGCAATGTTGGGCCAGCTGGAAAATTCTCTAGTCTGTTATACAACTGGTTTAGAGGTGCAGAAACGAGTGCTAGGAGAATCCGACCCCAGAGTTGGTGAGACGTATAGGTATTTAGCTGAAGCCCATGTTCAAGCCTTGCGATTTGATGAGGCTGAGAAATTTTGTCAAATGGCTCTTGATATTCACAAAAAGAATGTTGGTCCTGCTTCTCTTGAGGAGGCTGCAGATAGGAGGCTTATGGGTCTCATATGTGAAACGAAAGGAGACCACGAAGCTGCGCTCGAGCATCTAGTCTTAGCCAGCATGGCGATGGTGGCCAATGGCCAGGAGACTGATGTGGCTGCAGTTGATTGCAGTATTGGAGATTCATACTTATCCTTGTCACGTTACGACGAGGCTGTTTTTGCTTATCAGAAAGCCCTCACTGTTTTCAAGACCACGAAGGGAGAAAACCATCCAGCAGTTGGTTCGGTATTTGTTCGTCTTGCTGATTTATACAACAAGACTGGAAAAATGAGGGAATCAGAATCTTACTGTGAAAACGCCCTTCGAATTTACGAAAAGCCTGTCCCTGGGATTCCTCCAGAGGAGATTGCCAGTGGTCTTACTGATATTGCTGCTATTTATGAATCAATGAATGAAGTTGAGCAAGCAGTCAAATTATTACACAAGGCATTGAAAATATATAATGATGCCCCCGGACAGCAAAACACCATTGCTGGAATTGAAGCCCAGATGGGTGTCTTGTATTATATGTTGGGGAAATATTCTGAATCTTACGACTCCTTCAATAATGCAATTCCTAAGCTCCGCAGCAGCGGAGAGAAAAAATCTGCTTTTTTTGGTATAGCCCTTAATCAAATGGGGCTTGTGTGTGTTCAGAAATACGCCATAAACGAAGCCGTGGAGTTATTTGAAGAAGCCAAGAGCATACTAGAAAAAGAATACGGACCTTATCATCCCGATACTCTCGGGGTATATAGCAACCTCGCTGGAACATATGATGCGATTGGCAGGTTGGATGATGCAATTGAAATCTTGGAGTATGTTGTTGGCATGCGGGAGGAAAAACTCGGGACAGCAAATCCCGACGTCGACGATGAGAAGAGGAGGTTGTCCGAGTTGCTAAAAGAAGCAGGTAGAGTTCGGAGCCGAAAGGCGAGATCGCTCGAGACTCTTCTCGATTCCAATACTCAACCTGGAAACAGTAAAGCTATAAAGGTTCCAGGAGATGTGGTTCTCGACCTCTCAAACATGGCTAATGAGACCATCAAGCTTGGAGGCGGTCTTCGACAGGACCACGATGCTATCTCTGTCTCCAAAGTTGGAAAGCTGCGGTTCTCGAAGCCGAACAAATATTGGGTTGAAAGCTCACAGAAAAGGTACGTGCCATGTGTGGAAGATTGTGTTCTTGGAATCGTGGTTGACTCTAGATCCGATAATTTTCTTGTTGATATCAAAGGTCCGGCATTGGCCTTTCTTCCTGTTCTTGCATTTGAAGGAGGAACCAGGCGAAACATACCCAAATTTGAGATGGGTGCCCTGCTTTATGTGAGGGTAGTGAAGGCAAACCCTGGTATGAATCCTGAGTTGGCATGCACTGATGCCAGTGGGAAAGCAGCTGGATTTGGCCTCCTAAAAGATGGCTACATGTTTGAATGTTCAACTGGCTTATCAAGAATGCTTCTAAGCTCGCCAACATGTCCAGTTCTTGAATCTTTTGGGAACAAGCTTTCATTCGAGACAGCAGTTGGTTTAAATGGCCGAGTTTGGGTGAATGCTGATTCTCCTTCCACAACCATTGTGGTTTCAAATGCAATATTGAACTCCGAGACTCTGTCTGGGGTCCAACAGAGAATCATGGTGGACAAGCTCCTTAACAATTTAAAGCTGTCAACTCCAGCTCCTGCACGAGCTACGATTGAGGATCGTGGGGATGCGAAGGTGGAGGTTGAGAAGCAAACCTCTCCGCCATCGGTGTTTGTGAACTCTGAACCAATAAGAGAGGATCAAGTGCAAAATGCCGTGAAATTTCTTCAACATCCGAGAGTAAGAGGTTCTCCTGTTGTCTACAGACGATCGTTTTTAGAGAAAAAGAATCTCACGAAGGAAGAGATTGATGAGGCATTCAGGCGTGTGCCCGACCCGCCTTCTAATGCACAGACAGCTACTGTGAGTCAAGATGGACAGGTGAACACAGTTCAGCCACAGCCCTCTATGCAACCTCTTCAAACAGTTTCTGGTGTCGCTCCTCCTCCTGGTGGTGTAACTCACCAGGGTACCGTCACACGGTCTAGATTCCATTGGTCACAGGCCATTCTCGCTGTAGGATTATTGGCTATTTCAGGTGTTGGAACAGTTGTAGTAATCAAGAATTCTATTATTCCTAGGTTGAAATCTTGGGTGCGTAAAATTGTATTAGAAGACGAGGACATTGAGAAGAAAATTAATTCAAAACCAAGTGCAGCTGAGGAAGCAGCTGCTGCTGCCAAAGCAGCAGCAGCAGCAGCATCTGATATGGCAAAGGCGAGTCAGGAGATGCTGTATTCAAAAAGTGAAGAGAAAAAGAAGTTTGAAGATTTTGCCAACTTGTTGGATGCTCAGCTTGGGCAGATGAAGTTGATGCTGAATGCCATTCAGAAATTGGAAGGAACCACGTATGGAAGAACTACTACTGTCAATCAACAAGATTATCGAATTACTGCCATGAGTTCAAAGCAGCCATATTCCAATGGCAAGGTGGAATCTAGCGTGCAATCAGCCACACCTGCCATACCTGTTGAACCCTCAGTTGCACCACACCCCAAATCTTACATGGAGATCATGGCCATGGTCCAGAGAGGAGAAAAGCCATCTAATATTAGAGACATTGATGATTTACCTCCCAACCCAAATCAACAGCCATCAAATCCTCGTCTAGCTCCTAGAGCCAAGCCTTGGGAGGTTGGTACGCAAAACAATCCTGGCTTTTTCTATCAATCTCAAGAAAATGACAGTTCGAATTCCATGGTACAAAACAATGGCGTGACCTACATGAACAACAATGCTCCAGTGCCTTGGTGGCAGAAGAGAAATGTTAATATTACAGAGATCGAAAATCATGAGTTGAAGGTAGGCTCTTCCAATGGGCTCTCTGCTGAGAAACCAGTTCAACGTACATGGGTTCCTCCTCAGCCACCACCTGTTGCATTGCCAGAAGCAGCTGAAGCCATTCGAAGGCCAAAACCAACTATCCAGAAAGAGCAGCTTACTGACGAACATTTAGCAACACAACCAAATGTAACTGATGAGTTTCAGAAGGCCACAAAAGTTTCTGAATCTGGGGGAGCAATCGATTATGAGAACTTGGGAGTGAGCTCAAGTGAGATACAAGTGGAAGAAAATGGCTCCGGAGGACAATGA 4383 45.04 MPGIVMDEINEERTVNKHNGSSIHMEESYGNKSPRSGLSLQSPGSVHVHFPVDGLVDTSIEKLYENVCDMQSSDRSPSRRSFGSDGEESRIDSELNHLVGGEMREVDIIKEEEEIVEKPEHNLPSESMNHSPSADKKEKTENTQPGSSKRLSSGRKAPHLHLDLETSSKSSPRGKRLSDKPPFSRKNERNLKSPVAGHSKKPKDSPLRGSNMLNGTEDFNESTMDNPDLGPFLLKQARNLVSSGENLQKALLLALRAAKSFELSANGKPSLELAMCLHVTAAIYCSLGQYSEAVPLLEHSIEIPAIEEGHEHALAKFAGHMQLGDTYAMLGQLENSLVCYTTGLEVQKRVLGESDPRVGETYRYLAEAHVQALRFDEAEKFCQMALDIHKKNVGPASLEEAADRRLMGLICETKGDHEAALEHLVLASMAMVANGQETDVAAVDCSIGDSYLSLSRYDEAVFAYQKALTVFKTTKGENHPAVGSVFVRLADLYNKTGKMRESESYCENALRIYEKPVPGIPPEEIASGLTDIAAIYESMNEVEQAVKLLHKALKIYNDAPGQQNTIAGIEAQMGVLYYMLGKYSESYDSFNNAIPKLRSSGEKKSAFFGIALNQMGLVCVQKYAINEAVELFEEAKSILEKEYGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEYVVGMREEKLGTANPDVDDEKRRLSELLKEAGRVRSRKARSLETLLDSNTQPGNSKAIKVPGDVVLDLSNMANETIKLGGGLRQDHDAISVSKVGKLRFSKPNKYWVESSQKRYVPCVEDCVLGIVVDSRSDNFLVDIKGPALAFLPVLAFEGGTRRNIPKFEMGALLYVRVVKANPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPVLESFGNKLSFETAVGLNGRVWVNADSPSTTIVVSNAILNSETLSGVQQRIMVDKLLNNLKLSTPAPARATIEDRGDAKVEVEKQTSPPSVFVNSEPIREDQVQNAVKFLQHPRVRGSPVVYRRSFLEKKNLTKEEIDEAFRRVPDPPSNAQTATVSQDGQVNTVQPQPSMQPLQTVSGVAPPPGGVTHQGTVTRSRFHWSQAILAVGLLAISGVGTVVVIKNSIIPRLKSWVRKIVLEDEDIEKKINSKPSAAEEAAAAAKAAAAAASDMAKASQEMLYSKSEEKKKFEDFANLLDAQLGQMKLMLNAIQKLEGTTYGRTTTVNQQDYRITAMSSKQPYSNGKVESSVQSATPAIPVEPSVAPHPKSYMEIMAMVQRGEKPSNIRDIDDLPPNPNQQPSNPRLAPRAKPWEVGTQNNPGFFYQSQENDSSNSMVQNNGVTYMNNNAPVPWWQKRNVNITEIENHELKVGSSNGLSAEKPVQRTWVPPQPPPVALPEAAEAIRRPKPTIQKEQLTDEHLATQPNVTDEFQKATKVSESGGAIDYENLGVSSSEIQVEENGSGGQ 1460
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 7774285 7785494 + Cp4.1LG18g08390.1 Cpe18g00843 485304

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe18g00843 1460 SUPERFAMILY Nucleic acid-binding proteins 787 879 IPR012340 -
Cpe18g00843 1460 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 875 957 IPR036612 GO:0003723
Cpe18g00843 1460 Pfam Tetratricopeptide repeat 273 303 - -
Cpe18g00843 1460 MobiDBLite consensus disorder prediction 1 43 - -
Cpe18g00843 1460 ProSiteProfiles TPR repeat profile. 526 559 IPR019734 GO:0005515
Cpe18g00843 1460 Coils Coil 692 712 - -
Cpe18g00843 1460 MobiDBLite consensus disorder prediction 156 205 - -
Cpe18g00843 1460 CDD S1_Rrp40 788 873 IPR037319 GO:0003723
Cpe18g00843 1460 MobiDBLite consensus disorder prediction 1044 1063 - -
Cpe18g00843 1460 Pfam KH domain 876 924 IPR004088 GO:0003723
Cpe18g00843 1460 Gene3D Tetratricopeptide repeat domain 428 602 IPR011990 GO:0005515
Cpe18g00843 1460 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 1 724 - -
Cpe18g00843 1460 Pfam Family of unknown function (DUF5572) 1260 1309 - -
Cpe18g00843 1460 Gene3D - 714 790 - -
Cpe18g00843 1460 SMART tpr_5 441 474 IPR019734 GO:0005515
Cpe18g00843 1460 SMART tpr_5 274 307 IPR019734 GO:0005515
Cpe18g00843 1460 SMART tpr_5 526 559 IPR019734 GO:0005515
Cpe18g00843 1460 SMART tpr_5 317 350 IPR019734 GO:0005515
Cpe18g00843 1460 SMART tpr_5 651 684 IPR019734 GO:0005515
Cpe18g00843 1460 SMART tpr_5 567 600 IPR019734 GO:0005515
Cpe18g00843 1460 SMART tpr_5 483 516 IPR019734 GO:0005515
Cpe18g00843 1460 SMART tpr_5 609 642 IPR019734 GO:0005515
Cpe18g00843 1460 SMART tpr_5 359 392 IPR019734 GO:0005515
Cpe18g00843 1460 Gene3D Tetratricopeptide repeat domain 603 708 IPR011990 GO:0005515
Cpe18g00843 1460 Gene3D Tetratricopeptide repeat domain 235 427 IPR011990 GO:0005515
Cpe18g00843 1460 MobiDBLite consensus disorder prediction 68 224 - -
Cpe18g00843 1460 Pfam Tetratricopeptide repeat 610 677 - -
Cpe18g00843 1460 Pfam Tetratricopeptide repeat 322 391 - -
Cpe18g00843 1460 Pfam Tetratricopeptide repeat 440 515 - -
Cpe18g00843 1460 MobiDBLite consensus disorder prediction 21 43 - -
Cpe18g00843 1460 MobiDBLite consensus disorder prediction 1039 1063 - -
Cpe18g00843 1460 SUPERFAMILY TPR-like 250 685 IPR011990 GO:0005515
Cpe18g00843 1460 MobiDBLite consensus disorder prediction 1279 1304 - -
Cpe18g00843 1460 MobiDBLite consensus disorder prediction 80 124 - -
Cpe18g00843 1460 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 1 724 - -
Cpe18g00843 1460 Gene3D K Homology domain, type 1 872 955 IPR036612 GO:0003723
Cpe18g00843 1460 ProSiteProfiles TPR repeat profile. 441 474 IPR019734 GO:0005515
Cpe18g00843 1460 Pfam Pex14 N-terminal domain 995 1039 IPR006785 -
Cpe18g00843 1460 SUPERFAMILY Ribosomal L27 protein-like 734 787 - -
Cpe18g00843 1460 MobiDBLite consensus disorder prediction 209 223 - -
Cpe18g00843 1460 Gene3D - 795 871 IPR012340 -
Cpe18g00843 1460 Gene3D - 987 1053 IPR036388 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe18g00843 - - - bhj:120070989 1312.75
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe04g01552 Cpe18g00843 CCT
Cpe04g01552 Cpe18g00843 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00523 Cpe-Chr1:3009227 Cpe18g00843 Cpe-Chr18:7774285 0 dispersed
Cpe12g00441 Cpe-Chr12:3708930 Cpe18g00843 Cpe-Chr18:7774285 0 dispersed
Cpe14g00445 Cpe-Chr14:2777314 Cpe18g00843 Cpe-Chr18:7774285 0 dispersed
Cpe04g01553 Cpe-Chr4:12163855 Cpe18g00843 Cpe-Chr18:7774285 1.87E-148 transposed
Cpe04g01554 Cpe-Chr4:12167316 Cpe18g00843 Cpe-Chr18:7774285 0 transposed
Cpe12g01156 Cpe-Chr12:9482516 Cpe18g00843 Cpe-Chr18:7774285 2.60E-52 transposed
Cpe18g00843 Cpe-Chr18:7774285 Cpe04g01552 Cpe-Chr4:12159244 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g740 . . Bda06g00593 . . . Bma06g00233 . . . Cma10g00126 Cma11g00097 Car10g00117 Car11g00097 . . Cpe04g01552 Bhi02g00439 Tan09g2242 . . Hepe09g0198 . . Cla06g01660 Cam06g1845 Cec06g1896 Cco06g1901 Clacu06g1804 Cmu06g1745 Cre06g2564 Cone2ag0905 Cone16ag0107 . . . . . . . Blo15g00269 Bda11g01660 . Bpe07g00835 . . . . Cmo10g00132 Cmo11g00097 . . . . . Cpe18g00843 . . . . . . . . . . . . . . Lsi06g01550 Csa01g00154 Chy02g02576 Cme02g01966
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003461 3 3 3 3 3 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 1 2 2 48
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe18g00843 Cpe_Chr18 FPKM 6.179487 6.438307 7.462822 7.323096 9.986594 8.650104 10.867674 5.689158 5.571897 6.296106