Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe18g00844 ATGGCGTTGAATGTCCTTGCGCCGCTTGAAATGAAGGCTCTCTCCTTCTTAGACTCCTCCAGATCCAGACACTTCACCAAGCTTCAAGGAGCATCATCCTTGAAGGATTGTAGAACTATTGTTCAGAAAAGGATTCACTGTTCATCACAGCCTCCTCCTCCAGCTTGGCCTGGACGAGCAGTCACAGAGCCGCAACATAAGAAATGGGAAGGCCAGAAGCCGATCTCCATTTTAGGATCCACTGGTTCCATTGGAACTCAGACATTGGATATTGTGGCAGAGAATCCTGAGAAATTTAGAGTTGTGGCACTTGCAGCTGGCTCTAACATAACTCTTCTTGCGGATCAGGTGAAAACATTTAAACCTCAGATAGTTGCTGTAAGAAATGAGTCCTTAATCGATGAGCTCAAAGAGGCTTTGGGTGATCTTGATGAAAAGCCTGAGATTATCCCTGGCGAGCAGGGAGTAATTGAGGCTGCACGACACCCAGACGCAGCCACTGTTGTTACAGGAATAGTAGGTTGTGCTGGACTAAAGCCTACCGTTGCTGCAATTGAAGCTGGGAAAGACATAGCCTTGGCGAATAAAGAGACTCTGATTGCCGGTGGTCCCTTTGTTCTTCCCCTTGCCCACAAGCATAATGTAAAAATCCTTCCTGCCGATTCAGAACATTCAGCAATATTCCAGTGTATTCAGGGACTGTCCGAGGGTGCACTTCGCCGCATTATTTTGACTGCATCTGGCGGGGCTTTCAGAGACTTGCCGGTTGAAAAGTTGAAGGACGTTAAAGTTGCAGATGCTTTAAAGCATCCCAACTGGAGCATGGGAAAGAAAATCACTGTTGACTCCGCTACACTTTTCAACAAGGGTCTAGAAGTGATTGAAGCACACTATTTATTTGGAGCGGAATACGATAACATTGAGATTGTTATCCACCCGCAATCGATCATACATTCAATGGTAGAAACACAGGATTCATCTGTTTTAGCTCAATTGGGTTGGCCTGATATGCGCTTGCCCATTCTATACACCATAACATGGCCAGATAGAATACACTGCTCTGAAATAACTTGGCCTCGCCTTGATCTTTGCAAGCTAGGTTCACTCACATTCAAAACTCCAGACAATGTAAAATACCCATCCATGGATCTGGCCTATGCTGCTGGACGGGCGGGAGGAACCATGACTGGAGTCCTGAGTGCAGCTAATGAGAAGGCGGTGGAAATGTTCATCGATGAAAAAATCAGCTACTTGGATATTTTCAAGATTGTGGAGCTAACATGTGAAAAGCATCGAAATGAATTGATCAGTGCGCCTTCCCTTGAGGAGATCGTACATTACGACTCGTGGGCAAGGGTTTACGCTGCAAGTTTGCAGTCCTCTTCTTTTAGCCCTGTAGCTGCATGA 1407 45.98 MALNVLAPLEMKALSFLDSSRSRHFTKLQGASSLKDCRTIVQKRIHCSSQPPPPAWPGRAVTEPQHKKWEGQKPISILGSTGSIGTQTLDIVAENPEKFRVVALAAGSNITLLADQVKTFKPQIVAVRNESLIDELKEALGDLDEKPEIIPGEQGVIEAARHPDAATVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNVKILPADSEHSAIFQCIQGLSEGALRRIILTASGGAFRDLPVEKLKDVKVADALKHPNWSMGKKITVDSATLFNKGLEVIEAHYLFGAEYDNIEIVIHPQSIIHSMVETQDSSVLAQLGWPDMRLPILYTITWPDRIHCSEITWPRLDLCKLGSLTFKTPDNVKYPSMDLAYAAGRAGGTMTGVLSAANEKAVEMFIDEKISYLDIFKIVELTCEKHRNELISAPSLEEIVHYDSWARVYAASLQSSSFSPVAA 468
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 7788713 7793533 + Cp4.1LG18g08360.1 Cpe18g00844 485305

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe18g00844 468 Hamap 1-deoxy-D-xylulose 5-phosphate reductoisomerase [dxr]. 75 458 IPR003821 GO:0008299|GO:0030604|GO:0046872
Cpe18g00844 468 Pfam 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain 217 300 IPR013644 GO:0005515
Cpe18g00844 468 PIRSF Dxp_reductoisomrs 72 464 IPR003821 GO:0008299|GO:0030604|GO:0046872
Cpe18g00844 468 Pfam 1-deoxy-D-xylulose 5-phosphate reductoisomerase 75 203 IPR013512 GO:0070402
Cpe18g00844 468 TIGRFAM Dxr: 1-deoxy-D-xylulose 5-phosphate reductoisomerase 73 455 IPR003821 GO:0008299|GO:0030604|GO:0046872
Cpe18g00844 468 PANTHER 1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE 1 465 IPR003821 GO:0008299|GO:0030604|GO:0046872
Cpe18g00844 468 Gene3D - 377 461 - -
Cpe18g00844 468 Pfam DXP reductoisomerase C-terminal domain 332 453 IPR026877 -
Cpe18g00844 468 PANTHER 1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE-RELATED 1 465 - -
Cpe18g00844 468 SUPERFAMILY 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 365 459 IPR036169 -
Cpe18g00844 468 Gene3D - 65 221 - -
Cpe18g00844 468 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 198 335 - -
Cpe18g00844 468 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 73 221 IPR036291 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe18g00844 K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267] - csv:101207716 869.766
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g745 . . Bda06g00595 . . . . . . . Cma10g00125 . . . . . . . . . . . . . Cla06g01661 Cam06g1846 Cec06g1897 Cco06g1902 Clacu06g1805 Cmu06g1746 Cre06g2565 Cone2ag0907 Cone16ag0103 . . . . . . . . . . Bpe07g00836 . . . . Cmo10g00130 . . . . . . Cpe18g00844 . . . . . . . . . . . . . . . Csa01g00150 Chy02g02578 Cme02g01980
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009834 1 1 1 0 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe18g00844 Cpe_Chr18 FPKM 2.705279 3.346751 5.51121 4.142097 6.41728 6.97833 7.319587 6.327295 6.1345 8.137822