Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe18g00849 ATGAAAGGGCAAGAGAATGGGAGGAAACCTTTTGGTTTAGCTAAGTTCCTCCGAACTATGAATAGACACGATTATGGTGATTGGAAGGGGTGGACATCAGCCAGACGAGGTGGGATGACTGTTTTAGGAAAGGTTGCTGTTCCAAAACCTATAAACTTACCCAGTCAAAGGTTAGAAAATCATGGTTTGGACCCAAATGTGGAAATTGTACCCAAGGGTACCCTCAGTTGGGGCAATAAATCAACTTCATCTGCAACAAATGCTTGGGGCTCCTCATCTGGTTCTCCAAATACAGACAGTGCTTCTGGTTCACCAAGCCATCTCTGTGGTCGCCCTTCATCTGCTGGAGGTGGCACTCGTCCATCAACGGCTGGTAGTGACAGGTCCCATGAACCTCATGCTAATGCATGGGGTCCGAGTTCTAGACCATCATCTGCCTCTGGGCCTGTGACGTTAAGTCATGCATCACTCGCATCCTTGCGCCCCCACAGTGCTGAAACTAAATCTAGTAGCTCACAATTGTCACGATTTGCAGAGACTTCTGAAAATCCAGTGGCTTGGAATTCTGCTGTGACTATAGAGAAAGTGGGAGCGATGCCATGTAAGAGGGATGGGTTTTCTTTGACATCAGGAGATTTTCCTTCGCTGGGTTCTGAGAAAGAATGTGTAGGAAAGGATGCTGAGTCACGAGATACTAGGTCTAGTGAAGGAGCTACAATGAAAGAGAGGACTGGAACTTCGGCAATCGATGACCCTAAAAATGTGACTACAAATGTTGAAAGTGCTAATTCGTGGAGAAGTGATAATCTTCCGCACAACGATGATGGGCCTAGGCCCAGTGTAGAGAAATGGCTGGGGCATCCCCAACCTTACCCTGGTGCAAATATTCCTCCCCCACATTATGATGCTTGGCATGGTTCTCCAGTAAATAATCCTCAAGGTGGTGTATGGTATAGGGGTCCTCCACAAGGAGGTCCTCCATATAGAACTCCAGTTGCTCCTGGTAATTTTCCCATGGACCCATTTCTGTATTATCCTCCACATATTCCCTCAGGCGGTCTTCCCAATCCCCAGCCTTCTCATGGAACTGGACCCAGGGGACATCATACTAAAACTGGAGATATGTATAGACCTCCTATGCATGATGGTTTTATTCATCCAGGCATGCCAATTAGACCTGGATTTTACCCAGTTCCAGTTACCTATGAGGGATATTTCCGTCCTCCCATGGGCTACTGCAATTCAAGCGATAGAGATGCTCCATTTATGGGAATGTCTGCTGGACCTGCTGGCCCTGCTGTTTATAACAGGTACTTGGGCCAAGGCCAAATTGCATCTGAGCCTGCAAGTTCCCATCTGGTTCCAGAACAAGTAGAAGCTGGTCTTCCTTGTGATAATCAAGGACCATACAAGGTTCTTTTGAAGCAGCAGGGAAACTTAAATAGTAAGAACGAAGAAGAAAATAGGATAATCTCAACAACCACTAATCAGTTGATTGTTGAGAAGGATGACCAACAGAGGATGACTCCATGGGAGAATGACTGGGATCATAAAAAAGAAGTTGATTTGAGGAGAACGTTGGAGGTGGCACCGTATTCTCAGGCTTCTGCCAACCAAGAAACTCAATTTGCTGAAAGTATGAAAGCCAAGTCTCATGGAAACGAGAAGATTGGTGATGGTTTGCAAGAAAAATCGGCTGCTGCTGCTGCTGGTTTCTCTGAAGTTCCCAAACCACTGGCAACTGCCACAAAAGATTCAAGTCTGATTCAGAAGATAGAAGGATTAAATGCCAAAGCCCGAGCTTCTGATGTGCGACATGATGTTTCACCTATTTGCAGGAGGGAGGAGCCAAATGAGCTTCAATTTAATGATACACACTCTGATCATGTTATTGCCCAAGAAGCTAGTGCAAGTGCTGTTTTTCCTGAAAATAGGGATTTTAATGAAGTCATAGACCCAGGCTCCAGTGAATTAAGTTTGTCCACTGTAGATAGGAATGTTAAATTATACGGTGGAGCACATGTCCACAGGAGGCCTAATCGTGGAATGCAAGGGAGAAGTGATCATCATGGCAGAGCAAAAGTCAATACACGGGAGGTTGATGGGTGGCATAAAAGACCTCTGTTGGACTCCCCAGGCATGATGGCAACTCCCAACCAGGAAAGTTCTGTGCTTGCAAGAGACGACAATGCTATAGGCGCTATTAATAAGGCTGAGTCATTTTCTTCAGATAGCCATGGAGATGTACCTACTCCATCCATGGGTGATTCAAAAGATACTCAAGCTCAGCGCACAAAGATGAGAGAGCTAGCAAAGCAACGCACCAGACAATTGCAGGAGGAAGAGGAGGAAAGGACTAGAAAACAGAGGGCCAGGGCCCTGGCAAAACTTGAAGAATTGAACAGGCGTACAATAGCAGGGGAGGGTCCGAACCAGTGGTCTGAAAATGTTTCTAATGATGCCATAAGAAATAAGATACAAGAACCTCAAAATCTTGATGACCCAAGCACGCGTGGTAGTACTATATCTGGAGAGTATACCACAGTTTCTGATCCACACGTGGTTGCTAACAATAGTGAGTCAACTATGGGCACTAATAAAAATTCTCCCATTTTATCAGGAGATGCCCAATCGATGAAACCAAGTAGTGGCAGTAAGGAACAGGTTGTGGCACATAATCAATTGAGAACTTTGGAGCTGGAGGCAAGCATTAATGATGCAGTCCAAAAGAAGAATGCTTCGGAGGTAAATGGGGGCGGTGCATCCTTGAAGCACAAGCGTACAGGAAATAAACAAAAACCAAATATTCCATCTGAAAAGACTGAAAAGATTCCCCACTTAATTAAGGATTCAAAAGTTCAGACAGTTGTTGCTGACATTTCAGTTGTAGACGAGTCGAGTGCTATCATTACAGAACCTGTTGCTGAACATTCCACCCATGCAAGAAAGAAAAATAACAAGAGTGGGAAGAGCAGGCACAAAGTGGAAGAGACCTCGATATCTGCAGCATCACCTCAAATTTCAAAAGAGGCAAATCTTACAACGGAATATGATAAACCAAAGGCTTCTCAATCGGTAATGGATCCACCTTCAGATCCACAACCGCCAATTAATGGAGATGAAAATCAGTCCAGAGAGCAGCTACCTCTGTTACCAGTTGTAGAAACTCTTGGCAAAGGTAACGGTCAGTGGAAGTCTCAGCATTCTCGCAGGATGCCAAGAAATGCTCAAAATAGACCAGGAGAAAAGATCCATGGGAGTGATTCTGTTATCTGGGCCCCTGTGCGATCTCTCAACAAATGTGAGATTACGGATGAAACTCTTCATAAAAATGAAGCTGGGGCTGTTACTTCATCTGTAAAGATTGATAATCAAGTGCAGAGTATGCCAAAGAACAAGCGAGCTGAAAGAGAGATATATGTACCGAAGCCAGTAGTCAAGGAAATGGCACAGCAAGGAACCATCCATCAAGATATTTTCCCCATGAACCAGGCGCAAGATGATAATAAGGCAGATTCTAGTTCCAAAAGTTCTGATAATACTCGACCTGCTGGTGCTGTTTCTGGCAATGTGGGATTTTCCACAGATCACAGAAACGGGGATGGTAGGCACCATAAACAAAGCAAGGCACATGCATCGTGGCGCCAACGGGGAGCCACAGAATATGGGCAAGGCTTACAAGACCAATCATCTTATGTTTCAAATGCTGCTGGTAGTTTTGTTCAAAAATCAACTGAATATCAAGTACCTGAGAAGGCTACTGGAAGCACCATCAATGAGTTTACGAGCCACGTTGATGAGTGGGATCCACCCGATGGATGGAACGATCCCAACTACTCAGCCTCTATCCCAGCTGTCACTGCAGCTGTTGGGAGAGACCAGGGGGTGACAAGCAGGGGAAAACGGTCCCAATTTAAGGGGCACAAGGGTGTAGGGAACAATTTTGATTTGAATGAAAAGAAACTTAGAAGTGGAGACAATGAAAAAAATTCTTCCCAATCCTCAGTGCTCGGGGCAGATCAAAAAGATGTATTTGCTGCTGCCAAAGAAAATCGGGGTGTTGGGGAGCGTTCAACATCTCATTGGCAACCCAAATCCCGGATGGTTCAGCCCCACAATCATCAAAATAGCAAGCCTAGTGATGATCAAAATGTTGAAGCTGAAGCTGGACAGACTAATAAAATGGGATCTAGGCCATTTTCACATGCCACAAAAACGAGTGATGATGTGGCCCAAAATCAGTCCGATAGGTTTACTGGTGCAAGAACCATCATGGAAGAAGGACCAGATGTTGGTCCTCATGGGGCCAGAGTAGAGAAGAAAATTTACTCCCGCAAAGATCGTCCTTACTCCCCAGTCGAAGGTCCTATCCATACCGTTGAGGTTGCTCCAGCAAATACAGATACCAGACGCGATCAACCGTTGCCTACATTTTATCATAAAGGCGGTGAGAACAATAACCGCTTTGGACGAGGGCCAGAATCTCGTCGGGAAAGGAATTCCTCTCAACATCATAAGCAGCAGCAGCATTATCCACCTGCTAATAGAGACAGGCAGAGACAAAATTTGCAGTACGAGTACCAACCAGTTGGGCCACATAATGGAAAGCCGAACATGGATAATAGACCTAAGGATACCACACAGCATTCAGGATCAAGGTACGTGGAGAGGGGCCAAGAGTCAGTACTGGAGTTGGGTGCTAATTCTTTCTCTTTCTCGGACATGTCTGTTAAATTTGCTTCTCTTTCTTGTTCGGTTCCTTCTCTATCTTCACCCTCTGGCGCCCGGAGAAGCTCACAGCTGGGCTTTTCGCAAGCGTTGTATGGCATTGGCAGCCAGCAACGTAGTTTCCAGAGGTTAACGTTTGCTAAGGCTGAATCGTTCAAGTTAATGTATGGATTGCTGAGAAGATTTCCGAGGAGGCAAAATGTTCTCTCTGCTATTTCAGAGGACCAGTCTCAATGCAGTGAGCAGGGTGAGCTAGAGCAGATAGATCAGCAACCCACTGATGAGGATATCTCCCTCGAAAACAACTCATTTTTACACTCTGATGAGTGTACTGGTGGGAAACCGGGTTTCATCTCGTTTTACAACCATTCTAAAGAAGGTTACCAGACTCGTTTGTCAAGCGTGCAAAGCAATCAACACAAATTCTTATGGTTTGTTGGTCCAGCTGTCCTCATAGCTTCGTTCATTTTCCCCTCGCTTTATCTACGGAAACTACTTTCAAATATTTTCGAGGACTCTCTGTTGACAGACTTCCTTATATTGTTCTTCACGGAAGCAATGTTCTATTGTGGCGTTGCGGTGTTTCTTTTTTTAATAGACCGTTCAAGAAGGCCTACTGAACCCGATACTGTGAGAAACAGTTATCAAACCCTGTCTAATCAATTTGGACAGCGGATCTCTTCTGTAGCTGCCTTAGCACTCAGTTTAATAATACCTATGGTCACTATGGGGTTAGTGTGGCCATGGACAGGCCCAGCAGCATCTGCCACACTTGCACCTTACCTTGTTGGCATTGTTGTCCAATTTGCATTTGAACAATACGCACGGCGCAAGGAATCGCCGTCATGGCCTGTTATTCCAATTGTCTTTCAAGTTTACAGATTGCATCAACTTAATAGAGCAGCTCAACTGGTGACAGCACTTTCATTTACCATAAAAGGAGCTGAAATGACTCCAAATAACTTGGCAATAAACAGCTCTCTGGGTACGCTGTTGAATGTTCTTCAATTTCTTGGGATCATCTGTATCTGGTCTCTCTCAAGCTTTCTTATGAGGTTTTTCCCGTCAAATGCTGCGACACTGCAGTAA 5817 45.04 MKGQENGRKPFGLAKFLRTMNRHDYGDWKGWTSARRGGMTVLGKVAVPKPINLPSQRLENHGLDPNVEIVPKGTLSWGNKSTSSATNAWGSSSGSPNTDSASGSPSHLCGRPSSAGGGTRPSTAGSDRSHEPHANAWGPSSRPSSASGPVTLSHASLASLRPHSAETKSSSSQLSRFAETSENPVAWNSAVTIEKVGAMPCKRDGFSLTSGDFPSLGSEKECVGKDAESRDTRSSEGATMKERTGTSAIDDPKNVTTNVESANSWRSDNLPHNDDGPRPSVEKWLGHPQPYPGANIPPPHYDAWHGSPVNNPQGGVWYRGPPQGGPPYRTPVAPGNFPMDPFLYYPPHIPSGGLPNPQPSHGTGPRGHHTKTGDMYRPPMHDGFIHPGMPIRPGFYPVPVTYEGYFRPPMGYCNSSDRDAPFMGMSAGPAGPAVYNRYLGQGQIASEPASSHLVPEQVEAGLPCDNQGPYKVLLKQQGNLNSKNEEENRIISTTTNQLIVEKDDQQRMTPWENDWDHKKEVDLRRTLEVAPYSQASANQETQFAESMKAKSHGNEKIGDGLQEKSAAAAAGFSEVPKPLATATKDSSLIQKIEGLNAKARASDVRHDVSPICRREEPNELQFNDTHSDHVIAQEASASAVFPENRDFNEVIDPGSSELSLSTVDRNVKLYGGAHVHRRPNRGMQGRSDHHGRAKVNTREVDGWHKRPLLDSPGMMATPNQESSVLARDDNAIGAINKAESFSSDSHGDVPTPSMGDSKDTQAQRTKMRELAKQRTRQLQEEEEERTRKQRARALAKLEELNRRTIAGEGPNQWSENVSNDAIRNKIQEPQNLDDPSTRGSTISGEYTTVSDPHVVANNSESTMGTNKNSPILSGDAQSMKPSSGSKEQVVAHNQLRTLELEASINDAVQKKNASEVNGGGASLKHKRTGNKQKPNIPSEKTEKIPHLIKDSKVQTVVADISVVDESSAIITEPVAEHSTHARKKNNKSGKSRHKVEETSISAASPQISKEANLTTEYDKPKASQSVMDPPSDPQPPINGDENQSREQLPLLPVVETLGKGNGQWKSQHSRRMPRNAQNRPGEKIHGSDSVIWAPVRSLNKCEITDETLHKNEAGAVTSSVKIDNQVQSMPKNKRAEREIYVPKPVVKEMAQQGTIHQDIFPMNQAQDDNKADSSSKSSDNTRPAGAVSGNVGFSTDHRNGDGRHHKQSKAHASWRQRGATEYGQGLQDQSSYVSNAAGSFVQKSTEYQVPEKATGSTINEFTSHVDEWDPPDGWNDPNYSASIPAVTAAVGRDQGVTSRGKRSQFKGHKGVGNNFDLNEKKLRSGDNEKNSSQSSVLGADQKDVFAAAKENRGVGERSTSHWQPKSRMVQPHNHQNSKPSDDQNVEAEAGQTNKMGSRPFSHATKTSDDVAQNQSDRFTGARTIMEEGPDVGPHGARVEKKIYSRKDRPYSPVEGPIHTVEVAPANTDTRRDQPLPTFYHKGGENNNRFGRGPESRRERNSSQHHKQQQHYPPANRDRQRQNLQYEYQPVGPHNGKPNMDNRPKDTTQHSGSRYVERGQESVLELGANSFSFSDMSVKFASLSCSVPSLSSPSGARRSSQLGFSQALYGIGSQQRSFQRLTFAKAESFKLMYGLLRRFPRRQNVLSAISEDQSQCSEQGELEQIDQQPTDEDISLENNSFLHSDECTGGKPGFISFYNHSKEGYQTRLSSVQSNQHKFLWFVGPAVLIASFIFPSLYLRKLLSNIFEDSLLTDFLILFFTEAMFYCGVAVFLFLIDRSRRPTEPDTVRNSYQTLSNQFGQRISSVAALALSLIIPMVTMGLVWPWTGPAASATLAPYLVGIVVQFAFEQYARRKESPSWPVIPIVFQVYRLHQLNRAAQLVTALSFTIKGAEMTPNNLAINSSLGTLLNVLQFLGIICIWSLSSFLMRFFPSNAATLQ 1938
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 7825274 7837499 - Cp4.1LG18g08530.1 Cpe18g00849 485310

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe18g00849 1938 MobiDBLite consensus disorder prediction 249 270 - -
Cpe18g00849 1938 MobiDBLite consensus disorder prediction 206 277 - -
Cpe18g00849 1938 MobiDBLite consensus disorder prediction 138 182 - -
Cpe18g00849 1938 Coils Coil 764 803 - -
Cpe18g00849 1938 MobiDBLite consensus disorder prediction 737 766 - -
Cpe18g00849 1938 MobiDBLite consensus disorder prediction 1165 1195 - -
Cpe18g00849 1938 MobiDBLite consensus disorder prediction 737 760 - -
Cpe18g00849 1938 MobiDBLite consensus disorder prediction 1165 1226 - -
Cpe18g00849 1938 MobiDBLite consensus disorder prediction 73 182 - -
Cpe18g00849 1938 MobiDBLite consensus disorder prediction 1060 1074 - -
Cpe18g00849 1938 MobiDBLite consensus disorder prediction 1357 1420 - -
Cpe18g00849 1938 MobiDBLite consensus disorder prediction 859 883 - -
Cpe18g00849 1938 MobiDBLite consensus disorder prediction 1059 1085 - -
Cpe18g00849 1938 MobiDBLite consensus disorder prediction 1291 1554 - -
Cpe18g00849 1938 MobiDBLite consensus disorder prediction 1514 1528 - -
Cpe18g00849 1938 MobiDBLite consensus disorder prediction 1649 1663 - -
Cpe18g00849 1938 MobiDBLite consensus disorder prediction 351 373 - -
Cpe18g00849 1938 MobiDBLite consensus disorder prediction 1649 1668 - -
Cpe18g00849 1938 MobiDBLite consensus disorder prediction 1490 1513 - -
Cpe18g00849 1938 PANTHER PROTEIN MODIFIER OF SNC1 1 30 1570 IPR038808 -
Cpe18g00849 1938 Pfam BAT2 N-terminus 33 154 IPR009738 -
Cpe18g00849 1938 MobiDBLite consensus disorder prediction 826 846 - -
Cpe18g00849 1938 MobiDBLite consensus disorder prediction 1313 1327 - -
Cpe18g00849 1938 PANTHER PROTEIN MODIFIER OF SNC1 1 30 1570 - -
Cpe18g00849 1938 MobiDBLite consensus disorder prediction 219 238 - -
Cpe18g00849 1938 MobiDBLite consensus disorder prediction 1432 1452 - -
Cpe18g00849 1938 MobiDBLite consensus disorder prediction 75 109 - -
Cpe18g00849 1938 MobiDBLite consensus disorder prediction 998 1021 - -
Cpe18g00849 1938 MobiDBLite consensus disorder prediction 973 1047 - -
Cpe18g00849 1938 MobiDBLite consensus disorder prediction 912 944 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe18g00849 - - - csv:101207575 2467.96
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe04g01566 Cpe18g00849 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00129 Cpe-Chr6:636652 Cpe18g00849 Cpe-Chr18:7825274 8.41E-47 dispersed
Cpe13g00257 Cpe-Chr13:2005851 Cpe18g00849 Cpe-Chr18:7825274 5.56E-15 transposed
Cpe18g00849 Cpe-Chr18:7825274 Cpe04g01566 Cpe-Chr4:12261430 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g781 . . . . . . . . . . Cma10g00119 Cma11g00088 Car10g00106 Car11g00079 Sed08g0103 . Cpe04g01566 Bhi02g00478 Tan09g2266 Cmetu02g1512 . Hepe09g0213 . . Cla06g01673 Cam06g1861 Cec06g1911 Cco06g1916 Clacu06g1817 Cmu06g1758 Cre06g2575 . . . . . . . . . Blo15g00262 . . Bpe07g00848 . . . . Cmo10g00123 Cmo11g00088 . . . . . Cpe18g00849 . . . . . . . . . . . . . . Lsi06g01564 Csa01g00136 Chy02g02591 Cme02g01988
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006102 0 1 1 0 2 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe18g00849 Cpe_Chr18 FPKM 25.975725 33.949257 15.044377 16.837725 9.537803 10.63919 9.776083 7.988484 7.695395 6.367822